Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C11
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   1.2  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    27   2.8  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   4.9  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   4.9  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 189 LTTRKLAERLGVQQPALYWHFRNKR 263
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 626  VQLCHTTEVRFLHKDPKLAV-FPVTTL*ND 540
            + LCH   +  L  DPKLAV FP  ++ ND
Sbjct: 1109 IALCHNKGIDVLRLDPKLAVGFPSPSVLND 1138


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 28  LCDIHCAWRGFFITDKLVDILC 93
           +C +   WR  F TD +VDI+C
Sbjct: 479 ICQLAADWRKAFKTDVVVDIVC 500


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 353 DRECPQLQAGAARLPPAQWHHVLELQVAAALEYPSRGPSL--RVPSFLVQSGPYSES 517
           D+  P LQ   ++LP  QW  ++ L+   A   P   P +  + P FL      SE+
Sbjct: 699 DQLDPNLQT-LSKLPRTQWQTLINLEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEA 754


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 542 DGQCLAYNTTHYRDHFVQESWVRVSLGPSRDTLER 438
           DG+ ++Y   HY + +++   + V+  PS   LER
Sbjct: 859 DGEAISYAVLHYLNQYIKSYLLFVTHFPSLGILER 893


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,937
Number of Sequences: 5004
Number of extensions: 61764
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)