Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C10
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    27   3.5  
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    27   4.6  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   6.1  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    26   8.1  

>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 616 EPEHQVVPVAGHHRHLSLPE 557
           E EH ++  AGHH +L  PE
Sbjct: 387 EAEHHIISNAGHHCYLDNPE 406


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 124 EGNEGQERLGQEPWTLPADVAKVKHLGPEAHDQRRSXT 11
           EG +G+ER+   P+ +   +A +   GP+ +    S T
Sbjct: 125 EGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGT 162


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 64  QHPLGESKVPVQVVPGLRYLQPHQLLVVGSRGPYNEHR 177
           Q  L + K P++  PG R L+ H ++ VG       HR
Sbjct: 151 QKQLTDLKNPIEWYPGARKLRRHIIMHVGPTNSGKTHR 188


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
 Frame = +3

Query: 564 RLRCRWCPATGT-TWC 608
           R RCRWC   GT T+C
Sbjct: 369 RWRCRWCNVLGTGTFC 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,488
Number of Sequences: 5004
Number of extensions: 55514
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)