Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C10
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628...    32   0.69 
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998...    30   2.1  
03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843     29   4.9  
09_04_0394 - 17261008-17262476,17262554-17262743                       29   6.4  
08_02_0779 - 21128736-21128945                                         29   6.4  

>02_04_0211 +
           20957553-20957828,20957944-20958258,20962094-20962801,
           20963362-20963609,20963758-20964101,20964200-20964236,
           20964270-20964575,20965281-20965347,20965498-20965626
          Length = 809

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
 Frame = -2

Query: 702 PARVQEPEPLGRHRVPQRARN-HTATPISASRNTRSCQLRDTTGTLVFQ-NSLRV----S 541
           P   Q P+P  R R P R R    ATP S SR ++  +  D+TG  + +   LRV    S
Sbjct: 258 PDAPQSPDPPSRSR-PTRGRGKRVATPASGSRGSKRTR-SDSTGEALHRLADLRVKSSES 315

Query: 540 EARKQTISMSISAR 499
           +A+KQ    ++SAR
Sbjct: 316 KAQKQREREAMSAR 329


>07_03_0965 -
           22996575-22999112,22999202-22999636,22999717-22999801,
           22999888-22999957,23000050-23000293,23000396-23000482,
           23000655-23000706,23000830-23001226,23001324-23001648,
           23001748-23001914,23002007-23002547
          Length = 1646

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 293 KLRGEFLKETKVCT-IISPRPGTSTDGDEAQDTLVTKQGIQTDL 421
           +L  +  ++ K C  +++P PG S D D A D  V K+G+ +++
Sbjct: 478 ELASDGARQEKFCIDLMAPPPGKSPDRDGASDPDVDKKGLDSEM 521


>03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843
          Length = 588

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 502 EADQAHARL-VQLRQVHGPRVHRSV-SVQQIRLNSLFSDKRILGFISVG*GSGTGRY 338
           E D   ARL V L Q+  P+  R + SV+   L++ FSD+  +GF S      T  Y
Sbjct: 167 EYDAGDARLDVTLHQLTKPKPARPLLSVKPANLSAAFSDQMYVGFSSSTGSDDTSHY 223


>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +1

Query: 19  IVADRVLLGRGVSPSQ-HPLGESKVPVQVVPGLRYLQPHQLLVVGSRGPYNEH-R*YFCR 192
           +V +   LGRG   S  + LG  K+      G+R         V     Y +  + +FC 
Sbjct: 217 LVHNLTQLGRGSEHSYANLLGAKKIKTDDPAGVRSESLPSYAYVHLEHDYQQSDQLFFCD 276

Query: 193 EEDLLPAHIQWLLRRSTLH 249
           ++  + A + WL+ RS L+
Sbjct: 277 DDQTVLAKVNWLILRSNLY 295


>08_02_0779 - 21128736-21128945
          Length = 69

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
 Frame = +1

Query: 211 AHIQWLLRRSTLHR-------CRVLPHLRS*SIL*APR 303
           AH+ +L RRS+L R       C++ P+LR  S+  APR
Sbjct: 7   AHVSYLRRRSSLERGEAMHQRCQIRPYLRRSSVRSAPR 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,264,887
Number of Sequences: 37544
Number of extensions: 453371
Number of successful extensions: 1671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)