Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C10
         (874 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59103| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_16565| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_34875| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)                    28   8.7  
SB_24870| Best HMM Match : zf-GRF (HMM E-Value=0.019)                  28   8.7  

>SB_59103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 23/59 (38%), Positives = 36/59 (61%)
 Frame = +2

Query: 17  GSSLIVCFWAEVFHLRNIRWESPRFLSKSFLAFVTFNLINYSLLAAEVLTTNIADTSAE 193
           G S+++CFWAE FH+  +R++ PRFL+KS   F+  N   Y +L  +V+T    D   +
Sbjct: 22  GFSILICFWAETFHVAGLRFDKPRFLNKSHKGFIMINSFIYVVLLVQVITIETTDLKTQ 80


>SB_16565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 53  FHLRNIRWESPRFLSKSFLAFVTFNLINYSLLAAEVLTTNIADTSAE 193
           FH+  +R++ PRFL+KS   F+  N   Y +L  +V+T    D   +
Sbjct: 2   FHVAGLRFDKPRFLNKSHKGFIMINSFIYVVLLVQVITIETTDLKTQ 48


>SB_34875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 293 KLRGEFLKETKVCTIISPRPGTSTDGDEAQDTLVTKQGIQTD 418
           K+    +K T+    I P P T  D  E Q T  T  GIQT+
Sbjct: 197 KIPSSDIKTTEKPNTIGPPPSTIMDPGEGQSTQETDPGIQTE 238


>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 133 DEVEGNEGQERLGQEPWTLPADVAKVKHLGP 41
           DE EGNEG E  G++   LP+   K K   P
Sbjct: 48  DEDEGNEGSEGDGEKEKMLPSPEKKAKRTSP 78


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 657 PQRARNHTATPISASRNTRSCQLRDTTGTLVFQNSLRVSEAR 532
           P  AR  T TP SAS    +C   D  GT    N+ R S+ +
Sbjct: 752 PVEARYVTVTPTSASSGGGTCLRLDVFGTKALGNADRSSKVK 793


>SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)
          Length = 481

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 341 SPRPGT---STDGDEAQDTLVTKQGIQTDLLDGDGTVDPRSVDLSQLHQS 481
           SP PGT     DGDE+   +   Q ++ + L+ D  V+ + + + + H S
Sbjct: 306 SPVPGTISDGEDGDESYPRIAHVQTVKVEPLEDDQDVEKQILQMQEEHAS 355


>SB_24870| Best HMM Match : zf-GRF (HMM E-Value=0.019)
          Length = 197

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 708 EQPARVQEPEPLGRHRVPQRARNHTATP-ISASRN 607
           ++PA V  P  + + + P RAR  T TP + AS N
Sbjct: 110 KKPAAVWTPPSMKKKKAPARARKQTLTPRMGASAN 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,523,622
Number of Sequences: 59808
Number of extensions: 484474
Number of successful extensions: 1916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)