Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C06
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1033 - 27035977-27036144,27036420-27036544,27036695-270367... 128 4e-30
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572... 120 2e-27
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 82 7e-16
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 73 3e-13
07_03_1329 + 25844335-25845000 29 5.0
04_04_1310 - 32517074-32517193,32517295-32517360,32517468-325175... 28 8.7
01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955 28 8.7
01_06_0546 + 30124693-30124970,30125711-30125861,30125955-301261... 28 8.7
>06_03_1033 -
27035977-27036144,27036420-27036544,27036695-27036766,
27036872-27036976,27037513-27037567,27038196-27038276,
27039109-27039159,27039531-27039594,27040783-27040850,
27040993-27041079,27041401-27041655,27041768-27041890,
27042013-27042297,27042948-27043087,27043696-27043759,
27043929-27044048
Length = 620
Score = 128 bits (310), Expect = 4e-30
Identities = 70/187 (37%), Positives = 109/187 (58%)
Frame = +2
Query: 134 LQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQALV 313
L LRALM++ P L A ++P+ DAH SEY+ D RR+++S FTGSAG A++T +AL+
Sbjct: 14 LDELRALMAAHSPSLHALVVPSEDAHQSEYVSERDKRRQFVSGFTGSAGLALITMKEALL 73
Query: 314 WTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWTP 493
WTDGRY+ Q E+++ + W LM+ + + P +E W+A NL D V+G++P ++ D
Sbjct: 74 WTDGRYFLQAEQQL-TNRWKLMR--MGEDPPVEVWIADNLSDEAVIGINPWCISVDTAQR 130
Query: 494 IQTALKKISAQLVPISNNLVDDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIAELDG 673
+ A K L +S++LVD E+ P + + V Y G + EK+ EL
Sbjct: 131 YEHAFSKKHQTLFQLSSDLVD----EIWKDRPPVNALPVFVQPVEYAGCSVTEKLKELRE 186
Query: 674 RWWEKKA 694
+ +KA
Sbjct: 187 KLQHEKA 193
>07_01_0747 -
5724586-5724648,5725229-5725309,5725564-5725656,
5725775-5725929,5726023-5726131,5726291-5726481,
5727463-5727614,5728453-5728728,5729415-5729587,
5730023-5730298,5730839-5730958,5731051-5731176,
5731629-5731970
Length = 718
Score = 120 bits (289), Expect = 2e-27
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 1/179 (0%)
Frame = +2
Query: 128 QRLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQA 307
++L++LR L++ + AYI+P+ DAH SE+I RR +++ FTGSAGTAVVT +A
Sbjct: 86 EKLRSLRRLLARPDVAIDAYIVPSQDAHQSEFIAECFMRRAYLTGFTGSAGTAVVTKDKA 145
Query: 308 LVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEW 487
+WTDGRY+ Q E+E+ WTLM+ PT +WL L G VG+DP + D
Sbjct: 146 ALWTDGRYFLQAEKELS-HDWTLMRSGNQGVPTTSEWLNEVLPSGCRVGIDPFLFSFDAA 204
Query: 488 TPIQTALKKISAQLVPISN-NLVDDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIA 661
++ A+ + + +LV I + NLVD++ G+ P+ + ++Y G K++
Sbjct: 205 EELKDAISEKNHELVLIKDLNLVDEI---WGESRPEPPKEQTRVHGIKYAGVDVPSKLS 260
>11_05_0099 -
19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 81.8 bits (193), Expect = 7e-16
Identities = 47/139 (33%), Positives = 75/139 (53%)
Frame = +2
Query: 278 GTAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGV 457
G A++T +AL+WTDGRY+ Q E+++ W LM+ + + P +E W+A NL D VVG+
Sbjct: 112 GLALITMKEALLWTDGRYFLQAEQQLS-DRWKLMR--MGEDPPVEVWIADNLSDEAVVGI 168
Query: 458 DPQTMTRDEWTPIQTALKKISAQLVPISNNLVDDVRIELGDPAPKRSHNELAPLHVRYTG 637
+P ++ D + A K L +S++L+D E+ P + V Y G
Sbjct: 169 NPWCISVDTAQRYEHAFSKKHQTLFQLSSDLID----EIWKDRPSAEALPVFVQPVEYAG 224
Query: 638 RTAGEKIAELDGRWWEKKA 694
RT EK+ EL ++ +KA
Sbjct: 225 RTVTEKLKELREKFLHEKA 243
Score = 58.4 bits (135), Expect = 7e-09
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 134 LQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAV--VTSSQA 307
L LRALM++ P L A ++P+ DAH SEY+ D RR+++S FTGSA + V ++
Sbjct: 10 LDELRALMAAHSPPLHALVVPSEDAHQSEYVSERDKRRQFVSGFTGSADGTIGWVRVAEV 69
Query: 308 LVWTDGRYYTQFEREV 355
W Y + V
Sbjct: 70 GRWNGRHVYAMLAKVV 85
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 72.9 bits (171), Expect = 3e-13
Identities = 37/102 (36%), Positives = 60/102 (58%)
Frame = +2
Query: 257 SAFTGSAGTAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLK 436
+ FT G A++T +AL+WTDGRY+ Q E+++ W LM + + P +E W+A NL
Sbjct: 89 TTFTIWGGLALITMKEALLWTDGRYFLQAEKQLS-DHWELM--CMGEDPPVEVWIADNLS 145
Query: 437 DGDVVGVDPQTMTRDEWTPIQTALKKISAQLVPISNNLVDDV 562
D V+G++P ++ D + A K L +S++LVD+V
Sbjct: 146 DEAVIGINPWCISVDTAQRYEHAFSKKHQTLFQLSSDLVDEV 187
Score = 55.2 bits (127), Expect = 7e-08
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +2
Query: 134 LQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVV 292
L LRALM++ P L A ++P+ DAH SEY+ D R ++IS FTG A +AV+
Sbjct: 11 LDELRALMAAHSPPLHALVVPSDDAHQSEYVAERDKRLQFISGFTGIARSAVL 63
>07_03_1329 + 25844335-25845000
Length = 221
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = +2
Query: 410 EKWLASNLKDGDVVGVDPQTMTRDEWTPIQTALKKISAQLVPISNNLVDDVRIELGDPAP 589
EK L+ +L+ + + +T + +K+ SA+L N++DD R + P P
Sbjct: 81 EKALSDDLEKVSLEAESARMITLESSDGEVVKVKEASARLSKTIGNIIDDGRGDEAIPLP 140
Query: 590 KRSHNELAPLHVRYTGRTAGEK 655
S+ L + V Y + A EK
Sbjct: 141 DVSYKTLKKV-VEYCDKHADEK 161
>04_04_1310 -
32517074-32517193,32517295-32517360,32517468-32517558,
32517741-32517870,32517944-32518032,32518300-32518376,
32518539-32518607,32518800-32518874,32519040-32519135,
32519232-32519396
Length = 325
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 173 VLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTA 286
++AA + PTA+ HN + AA R+W ++ +A
Sbjct: 3 IVAALVAPTANPHNPLRLIAAAPHRQWRRVAAAASSSA 40
>01_06_1427 + 37296883-37297588,37298504-37298658,37300596-37300955
Length = 406
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 688 LLPPSSV*FRDLLSRCSTGVADV*WR*FIVRSLRRRVPEFNPDIVH 551
LLP ++ + DL+ RC+ + ++RSL R+ + NP I+H
Sbjct: 349 LLPQEAMQYLDLVCRCTKNTRHLV---SMLRSLAERLEDANPAIIH 391
>01_06_0546 +
30124693-30124970,30125711-30125861,30125955-30126137,
30126333-30126407,30126535-30126690,30126909-30127007,
30127075-30127205,30127690-30127771,30127846-30128199
Length = 502
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 176 LAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQALVWTDGRYYTQFEREV 355
+AA I+ T N+ YID ADA +W + S G V+ + T+F++E+
Sbjct: 248 IAAVILGTGS--NAAYIDHADAIPKWHGSLPKS-GNMVINMEWGNFKSSHLPLTEFDQEL 304
Query: 356 DLSAWTLMKQ 385
D + KQ
Sbjct: 305 DAESLNPGKQ 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,391,048
Number of Sequences: 37544
Number of extensions: 530324
Number of successful extensions: 1285
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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