Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C06
         (895 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27029| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   2e-18
SB_29533| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   4e-04
SB_46540| Best HMM Match : RVT_1 (HMM E-Value=4.8e-27)                 33   0.41 
SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)         31   0.95 
SB_4424| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.7  
SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9)                 30   2.9  
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_19063| Best HMM Match : rve (HMM E-Value=3.6e-14)                   29   6.7  
SB_53674| Best HMM Match : rve (HMM E-Value=0.00095)                   29   6.7  
SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   6.7  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           29   6.7  
SB_43815| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)              28   8.9  
SB_43584| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)              28   8.9  
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)                    28   8.9  

>SB_27029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 42/69 (60%), Positives = 49/69 (71%)
 Frame = +2

Query: 176 LAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQALVWTDGRYYTQFEREV 355
           L AYI+P  DAH SEYI   D RR ++S FTGSAGTAVVT +QA +WTDGRYY Q   E+
Sbjct: 6   LDAYIVPPTDAHQSEYISTHDMRRAFVSGFTGSAGTAVVTRTQAALWTDGRYYVQAAMEL 65

Query: 356 DLSAWTLMK 382
           D   W LM+
Sbjct: 66  D-DNWKLMR 73



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +2

Query: 506 LKKISAQLVPISNNLVDDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIAELDGRWWE 685
           L +   QL  ++ NLVD +  +     P + +  L  L V+YTG+T   K+ ++  +  E
Sbjct: 168 LNESKIQLEAVTPNLVDVIWAD----QPDKPNATLISLSVKYTGKTWQSKVTDMRVKMRE 223

Query: 686 KKASA 700
             ASA
Sbjct: 224 ANASA 228


>SB_29533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +2

Query: 263 FTGSAGTAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQ 385
           F    G A+VT + A +WTDGRY+ Q E E+D + W L K+
Sbjct: 2   FPEVTGMAIVTVASAALWTDGRYFLQAEMEMDCN-WKLQKE 41


>SB_46540| Best HMM Match : RVT_1 (HMM E-Value=4.8e-27)
          Length = 751

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 21/101 (20%), Positives = 42/101 (41%)
 Frame = +2

Query: 407 LEKWLASNLKDGDVVGVDPQTMTRDEWTPIQTALKKISAQLVPISNNLVDDVRIELGDPA 586
           +EK   +N +  D +  D    + D   P+    ++ S +   +  N++   R+E   P 
Sbjct: 615 IEKKAEANKRRYDALSDDLTLQSGDRVLPVYVVQQEQSGKKRVLHRNILLPYRVERAGPE 674

Query: 587 PKRSHNELAPLHVRYTGRTAGEKIAELDGRWWEKKASAPRP 709
           P++ H    PL  ++   T     ++ D  W +  A+   P
Sbjct: 675 PRQQHRRKDPLRRQHEDDTE-SSASDSDSSWSDFVATELNP 714


>SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)
          Length = 1043

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +2

Query: 380  KQTLPDTPTLEKWLAS--NLKDGDVVGVDPQTMTRDEWTPIQTALKKISAQLVPISNNLV 553
            ++ L     L KW+    NL+  D+V +    + R++W      L ++++ ++   +NLV
Sbjct: 949  REFLQSLQVLHKWIRPRRNLEQDDIVLIKEDKVPRNKWR-----LARVTS-VIQDEDNLV 1002

Query: 554  DDVRIELGDP 583
              VR+ +GDP
Sbjct: 1003 RKVRVVVGDP 1012


>SB_4424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 3/30 (10%)
 Frame = +2

Query: 131 RLQALRALMSSQRPV---LAAYIIPTADAH 211
           RLQALRALM+++      + AY++P++DAH
Sbjct: 2   RLQALRALMANKTITDGGVQAYMVPSSDAH 31


>SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9)
          Length = 262

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 215 SEYIDAADARREWISAFTGSAG 280
           SEY+ + D RR +IS F GSAG
Sbjct: 67  SEYLASCDLRRGFISGFDGSAG 88


>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 242 RREWISAFTGSAGTAVVTSSQALVWTDG--RYYTQFER 349
           RREW+S+F    G   + SS  L+ T G  +++T  ER
Sbjct: 289 RREWLSSFIDLGGLHRLLSSLTLLGTKGHEKFFTTLER 326


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 368 WTLMKQTLP--DTPTLEKWLAS--NLKDGDVVGVDPQTMTRDEW 487
           WT  ++ L   D  T +KW     NL+ GD+V V  +++ R++W
Sbjct: 188 WTRPRRNLEVGDISTRQKWTCPRRNLEVGDIVIVTDESLHRNDW 231


>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3038

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 368  WTLMKQTLPDTPTLEKW--LASNLKDGDVVGVDPQTMTRDEW 487
            WT   + LP      KW  +  NLK+GDVV +  +   R EW
Sbjct: 1850 WT--SEYLPTLMERTKWTTVRENLKEGDVVLLADENFRRGEW 1889


>SB_19063| Best HMM Match : rve (HMM E-Value=3.6e-14)
          Length = 467

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 368 WTLMKQTLPDTPTLEKW--LASNLKDGDVVGVDPQTMTRDEW 487
           WT   + LP      KW  +  NLK+GDVV +  +   R EW
Sbjct: 408 WT--SEYLPTLMERTKWTTVRENLKEGDVVLLADENFRRGEW 447


>SB_53674| Best HMM Match : rve (HMM E-Value=0.00095)
          Length = 263

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 368 WTLMKQTLPDTPTLEKW--LASNLKDGDVVGVDPQTMTRDEW 487
           WT   + LP      KW  +  NLK+GDVV +  +   R EW
Sbjct: 184 WT--SEYLPTLMERTKWTTVRENLKEGDVVLLADENFRRGEW 223


>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 368 WTLMKQTLP--DTPTLEKWLAS--NLKDGDVVGVDPQTMTRDEW 487
           WT  ++ L   D  T +KW     NL+ GD+V V  +++ R++W
Sbjct: 387 WTRPRRNLEVGDISTRQKWTRPRRNLEVGDIVIVKDESLHRNDW 430


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -1

Query: 358  VDLPLELRVVSTVGPDESLR*RHNCSTSRPGEGGYPLASGV 236
            +D  +E+R V+    +E+L   + CS ++ GE GYP ++GV
Sbjct: 912  MDADIEVRYVTFQEREEALL-GNVCSPNQEGERGYPWSTGV 951


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 185 YIIPTADAHNSEYIDAADARREWI 256
           Y++     HN+EY +  +A REWI
Sbjct: 84  YLVAGPPLHNNEYNEQQEAEREWI 107


>SB_43815| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)
          Length = 303

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 429 FEASHFSKVGVSGSVCFIKVHADKSTSL 346
           FEA+HF    V+G+  FIKVH    + L
Sbjct: 238 FEATHFRSQVVAGTNYFIKVHVGNGSYL 265


>SB_43584| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)
          Length = 306

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 429 FEASHFSKVGVSGSVCFIKVHADKSTSL 346
           FEA+HF    V+G+  FIKVH    + L
Sbjct: 241 FEATHFRSQVVAGTNYFIKVHVGNGSYL 268


>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
          Length = 885

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 488 TPIQTALKKISAQLVPISNNLVDDV 562
           TP  TALKKI +QL P  +NL  ++
Sbjct: 115 TPGGTALKKICSQLEPFLDNLYSEI 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,056,856
Number of Sequences: 59808
Number of extensions: 583069
Number of successful extensions: 1364
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)