Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C06
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039716-4|AAB96739.1| 616|Caenorhabditis elegans Aminopeptidas... 132 4e-31
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ... 77 1e-14
Z82070-7|CAB04909.1| 321|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z82070-6|CAB04910.1| 321|Caenorhabditis elegans Hypothetical pr... 31 1.5
U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n... 31 1.5
U20864-8|AAC46665.2| 330|Caenorhabditis elegans Peroxisome asse... 29 5.9
>AF039716-4|AAB96739.1| 616|Caenorhabditis elegans Aminopeptidase p
protein 1 protein.
Length = 616
Score = 132 bits (318), Expect = 4e-31
Identities = 75/200 (37%), Positives = 110/200 (55%), Gaps = 7/200 (3%)
Frame = +2
Query: 122 SLQRLQALRALMSSQRPV-------LAAYIIPTADAHNSEYIDAADARREWISAFTGSAG 280
+L++L LR+L S+R + + AY++P+ DAH+SEY+ D R +++S F+GS
Sbjct: 3 ALEKLAKLRSLFHSERVLALTSSKPMVAYLLPSTDAHHSEYLADYDFRVKFLSGFSGSNA 62
Query: 281 TAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVD 460
VVT +AL+WTDGRY+TQ ++D ++W LMKQ PD+ T+ WL L+ G V+G D
Sbjct: 63 YVVVTDREALLWTDGRYFTQAGNQLDSNSWKLMKQGQPDSITVVDWLVRELERGSVIGFD 122
Query: 461 PQTMTRDEWTPIQTALKKISAQLVPISNNLVDDVRIELGDPAPKRSHNELAPLHVRYTGR 640
P T D + LK Q V I NLVD E P+ + + L V TG
Sbjct: 123 PTLSTFDAGSKTFKRLKAAGLQPVSIPGNLVD----EFWTDRPRLAGEPVVVLDVEDTGL 178
Query: 641 TAGEKIAELDGRWWEKKASA 700
T +K+ L + +KK A
Sbjct: 179 TTSKKVENLREKLKQKKCDA 198
>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
protein Y45G5AM.2 protein.
Length = 1061
Score = 77.4 bits (182), Expect = 1e-14
Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Frame = +2
Query: 131 RLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQAL 310
R + R L + R +AAYI+P DAH +E I +R ++++ ++G +G A++T ++A+
Sbjct: 462 RFASERTLGYTDRTPIAAYILPNTDAHQNELIPDFFSRVQFLNGYSGPSGLAIITLNEAM 521
Query: 311 VWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWT 490
W D E +VD +WT+ + + WLA L VG DP T+ W
Sbjct: 522 FWVDNGLLKSAESQVDDRSWTV--KEYQSVEEVINWLAKILPPKSKVGFDP-TLVSYTWH 578
Query: 491 PIQTALKKISA---QLVPISNNLVDDV 562
Q AL+ +++ +LV I N+VD++
Sbjct: 579 --QQALQSMTSDRFELVAIPGNIVDEI 603
>Z82070-7|CAB04909.1| 321|Caenorhabditis elegans Hypothetical
protein W04E12.8 protein.
Length = 321
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = -2
Query: 462 GSTPTTSPSLRFEASHFSKVGV--SGSVCFIKVHADKSTSLSNCV*Y------LPSVQTR 307
G+ T PS+ F+ S++ ++G SGS C I+ D + S C Y P + T
Sbjct: 96 GTWKWTDPSVTFDYSNW-QLGEPQSGSDCAIQDKGDGTWSAIGCTSYRPYVCVTPVIMTA 154
Query: 306 ACDDVTTAVP 277
C +TT +P
Sbjct: 155 TCPPITTPIP 164
>Z82070-6|CAB04910.1| 321|Caenorhabditis elegans Hypothetical
protein W04E12.6 protein.
Length = 321
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = -2
Query: 462 GSTPTTSPSLRFEASHFSKVGV--SGSVCFIKVHADKSTSLSNCV*Y------LPSVQTR 307
G+ T PS+ F+ S++ ++G SGS C I+ D + S C Y P + T
Sbjct: 96 GTWKWTDPSVTFDYSNW-QLGEPQSGSDCAIQDKGDGTWSAIGCTSYRPYVCVTPVIMTA 154
Query: 306 ACDDVTTAVP 277
C +TT +P
Sbjct: 155 TCPPITTPIP 164
>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
nucleotide transhydrogenaseprotein 1 protein.
Length = 1041
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/99 (26%), Positives = 44/99 (44%)
Frame = -2
Query: 672 PSNSAIFSPAVLPV*RTCNGASSLCDLLGAGSPSSILTSSTRLFEIGTSWALIFFRAVCI 493
PS + P + P +T N L LG+ S I ++ ++ + T++AL A +
Sbjct: 411 PSENTALVP-LTPFRKTANQTLLLTSGLGSVSLLGIAGTNPQISSMSTTFAL----AGLV 465
Query: 492 GVHSSLVIVWGSTPTTSPSLRFEASHFSKVGVSGSVCFI 376
G H+ VWG TP L + S +G++C +
Sbjct: 466 GYHT----VWGVTPALHSPLMSVTNAISGTTAAGALCLM 500
>U20864-8|AAC46665.2| 330|Caenorhabditis elegans Peroxisome
assembly factor protein13 protein.
Length = 330
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +2
Query: 215 SEYIDAADARREWISAFTGSAGTAVVTSSQALVWTDGRYYTQFEREVD-LSAWTLMKQTL 391
S+ + AA+ +R+W + G A ++QAL + E+E+ ++ TL
Sbjct: 218 SQMVQAAEEKRKW------ATGAAPHYTAQALF----DFQASNEQELSFMNGETLRVAPK 267
Query: 392 PDTPTLEKWLASNLKDGDVVGVDPQTMTR 478
+ P + WL +++ DG +G+ P R
Sbjct: 268 EEQPRVRGWLLASVADGSRIGLVPINYVR 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,419,411
Number of Sequences: 27780
Number of extensions: 408988
Number of successful extensions: 897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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