Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C05
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical... 40 0.002
Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical p... 38 0.007
Z69902-7|CAA93769.1| 618|Caenorhabditis elegans Hypothetical pr... 35 0.067
AB023424-1|BAA82800.1| 618|Caenorhabditis elegans kel-1 protein. 35 0.067
Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane... 31 1.1
Z81544-9|CAI79252.1| 231|Caenorhabditis elegans Hypothetical pr... 31 1.4
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 4.4
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 5.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 5.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 5.8
Z30662-10|CAI58651.1| 409|Caenorhabditis elegans Hypothetical p... 28 7.7
Z30662-9|CAA83138.2| 451|Caenorhabditis elegans Hypothetical pr... 28 7.7
>AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical
protein R12E2.1 protein.
Length = 531
Score = 40.3 bits (90), Expect = 0.002
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 2/152 (1%)
Frame = +2
Query: 305 LSALNALRKSRQHYDAVLVAGGTEVXXXXXXXXXXSPYLLEALXXXXXXXXXXXXXXXXY 484
L L L+ D L+ G + SPY L
Sbjct: 43 LQQLGGLKNRDVLCDVTLICGWKRINAHRVVLSACSPYFLSMFTSQMAECYMREI----- 97
Query: 485 RVEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPA 664
+E+++ L L+E+ YTG + + D+ + V+ D L K+L P+
Sbjct: 98 NMEEIEPPTLEALIEFCYTGAIAIDDS-NVQDILPAACLLQIHEVQTACCDYLKKQLDPS 156
Query: 665 DCLEVRSLXDL--SPHHLAQLDAYIAQHFEXV 754
+CL +R+ D L+ D + ++F V
Sbjct: 157 NCLGIRAFADTHSCKELLSSADEFALKNFSRV 188
>Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical
protein T27E9.4a protein.
Length = 589
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +2
Query: 488 VEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPAD 667
+ED++ + + L+ +AYTG +R+ + +E V+ H + LL RL P++
Sbjct: 94 IEDMNYETVDALLSFAYTGELRITTSNVQSIMLGANFFQMLEVVQ-HCGNFLLTRLHPSN 152
Query: 668 CLEVRSLXDLS--PHHLAQL-DAYIAQHFEXV 754
L +R + + ++ D YI +HF V
Sbjct: 153 ALSIREFCKMMCVEEKITEMTDDYIQKHFMAV 184
>Z69902-7|CAA93769.1| 618|Caenorhabditis elegans Hypothetical
protein C47D12.7 protein.
Length = 618
Score = 35.1 bits (77), Expect = 0.067
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +2
Query: 488 VEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPAD 667
+++VD + L +L++Y YTGR+R+ D + VR A +L+ L +
Sbjct: 114 IKEVDVEVLSQLIDYMYTGRMRI-DEQNVQTILATASLLQLTCVRDACARFMLELLDMTN 172
Query: 668 CLEVRSLXDL-SPHHLAQ-LDAYIAQHFEXVCXTGAMAAL 781
C+ + + H LA Y QHF + + +L
Sbjct: 173 CVGMAEFARAHACHQLAHAAQLYTRQHFVEIIDNEELLSL 212
>AB023424-1|BAA82800.1| 618|Caenorhabditis elegans kel-1 protein.
Length = 618
Score = 35.1 bits (77), Expect = 0.067
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +2
Query: 488 VEDVDADALRELVEYAYTGRVRVKDTXXXXXXXXXXXXXXVESVRAHLADRLLKRLAPAD 667
+++VD + L +L++Y YTGR+R+ D + VR A +L+ L +
Sbjct: 114 IKEVDVEVLSQLIDYMYTGRMRI-DEQNVQTILATASLLQLTCVRDACARFMLELLDMTN 172
Query: 668 CLEVRSLXDL-SPHHLAQ-LDAYIAQHFEXVCXTGAMAAL 781
C+ + + H LA Y QHF + + +L
Sbjct: 173 CVGMAEFARAHACHQLAHAAQLYTRQHFVEIIDNEELLSL 212
>Z32681-3|CAD88217.1| 685|Caenorhabditis elegans Hypothetical
protein F56F3.2b protein.
Length = 685
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = -2
Query: 253 TAFFAFAVFLSSIAIPVVALRSHLGKVPRYSCPVMTL*SLDRRYYLTTVIRLRTLRFLRL 74
T FA+ VF SSI V R++ ++P P++TL + +L F R
Sbjct: 442 TQLFAYTVFGSSIIFSFV--RAYSQELP--PAPMLTLEPVPLTKVYAVFDQLLLSLFARS 497
Query: 73 SNYCLG 56
SNYCLG
Sbjct: 498 SNYCLG 503
>Z32681-2|CAA83607.1| 687|Caenorhabditis elegans Hypothetical
protein F56F3.2a protein.
Length = 687
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = -2
Query: 253 TAFFAFAVFLSSIAIPVVALRSHLGKVPRYSCPVMTL*SLDRRYYLTTVIRLRTLRFLRL 74
T FA+ VF SSI V R++ ++P P++TL + +L F R
Sbjct: 442 TQLFAYTVFGSSIIFSFV--RAYSQELP--PAPMLTLEPVPLTKVYAVFDQLLLSLFARS 497
Query: 73 SNYCLG 56
SNYCLG
Sbjct: 498 SNYCLG 503
>AF173373-1|AAD51973.1| 687|Caenorhabditis elegans transmembrane
protein NDG-4 protein.
Length = 687
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = -2
Query: 253 TAFFAFAVFLSSIAIPVVALRSHLGKVPRYSCPVMTL*SLDRRYYLTTVIRLRTLRFLRL 74
T FA+ VF SSI V R++ ++P P++TL + +L F R
Sbjct: 442 TQLFAYTVFGSSIIFSFV--RAYSQELP--PAPMLTLEPVPLTKVYAVFDQLLLSLFARS 497
Query: 73 SNYCLG 56
SNYCLG
Sbjct: 498 SNYCLG 503
>Z81544-9|CAI79252.1| 231|Caenorhabditis elegans Hypothetical
protein F49C5.10 protein.
Length = 231
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 616 RLDTQPPGGTIQSPGRERIFDPNSTGVSVFHKFP 515
++D PPG TI P + P ST VS+ FP
Sbjct: 165 QIDCSPPGNTICFPTGLKAITPTSTSVSIGTDFP 198
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -1
Query: 719 AVPNDGAKDRXETEPPDNL--PEPIASTNGPPGEP*PTRH 606
+ P+D PP ++ P+P GPPG P P +H
Sbjct: 687 STPSDTPAPSTSVPPPTSVQPPQPQQPPQGPPGPPGPQQH 726
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 755 IPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTRHAAS 597
+P + PA +DG E P D+ +P+ + GP G P PT S
Sbjct: 3126 LPTDGTGNFIYPATTSDG-----EVIPTDDSGKPLYTIRGPDGTPLPTDETGS 3173
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 755 IPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PT 612
+P N+ Y P V DG + P D +PI GP G P PT
Sbjct: 4928 LPTDNSGNYIYPIVGPDG-----QALPTDASGKPIYPVRGPDGTPLPT 4970
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 755 IPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTRHAAS 597
+P + PA +DG E P D+ +P+ + GP G P PT S
Sbjct: 3171 LPTDGTGNFIYPATTSDG-----EVIPTDDSGKPLYTIRGPDGTPLPTDETGS 3218
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 755 IPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PT 612
+P N+ Y P V DG + P D +PI GP G P PT
Sbjct: 4973 LPTDNSGNYIYPIVGPDG-----QALPTDASGKPIYPVRGPDGTPLPT 5015
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 755 IPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PTRHAAS 597
+P + PA +DG E P D+ +P+ + GP G P PT S
Sbjct: 3171 LPTDGTGNFIYPATTSDG-----EVIPTDDSGKPLYTIRGPDGTPLPTDETGS 3218
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 755 IPXRNAAQYKRPAVPNDGAKDRXETEPPDNLPEPIASTNGPPGEP*PT 612
+P N+ Y P V DG + P D +PI GP G P PT
Sbjct: 4973 LPTDNSGNYIYPIVGPDG-----QALPTDASGKPIYPVRGPDGTPLPT 5015
>Z30662-10|CAI58651.1| 409|Caenorhabditis elegans Hypothetical
protein T16H12.5b protein.
Length = 409
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 488 VEDVDADALRELVEYAYTGRVR 553
V+D++ + +REL+ Y YTG+ +
Sbjct: 272 VDDIEPEVMRELLVYMYTGQTK 293
>Z30662-9|CAA83138.2| 451|Caenorhabditis elegans Hypothetical
protein T16H12.5a protein.
Length = 451
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 488 VEDVDADALRELVEYAYTGRVR 553
V+D++ + +REL+ Y YTG+ +
Sbjct: 314 VDDIEPEVMRELLVYMYTGQTK 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,631,872
Number of Sequences: 27780
Number of extensions: 366081
Number of successful extensions: 1285
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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