Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C03
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containi...    31   0.74 
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.98 
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine...    30   2.3  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   5.2  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   5.2  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   9.1  
At3g62370.1 68416.m07006 expressed protein                             28   9.1  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   9.1  

>At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 883

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -1

Query: 790 SNAWRIWFRNDRKSRHRRIKKQRRYERLAATSQ 692
           S AWRI +RN  K   +  KK RR ER    SQ
Sbjct: 694 SKAWRIEWRNSTKGTTKNGKKNRRRERTNILSQ 726


>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 396 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 250
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
           deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
           similar to cytidine deaminase (CDD) [Arabidopsis
           thaliana] GI:3046700; contains Pfam profile PF00383:
           Cytidine and deoxycytidylate deaminase zinc-binding
          Length = 293

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 616 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHLRYSLTGVP 494
           A PMR    H++  S+  F P+ +S L   A+ H R  ++G P
Sbjct: 2   AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 536 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFXIK 649
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 499 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 383
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 360 DRAPLPPNRVSNETMKVVVFQRRSRET 280
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 484 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 389
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 411 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 274
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,097,433
Number of Sequences: 28952
Number of extensions: 379995
Number of successful extensions: 1008
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)