Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C01
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   317   1e-87
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   316   2e-87
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    29   0.82 
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   0.90 
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.8  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    26   7.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  317 bits (778), Expect = 1e-87
 Identities = 149/265 (56%), Positives = 191/265 (72%)
 Frame = +2

Query: 44  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 223
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 224 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 403
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 404 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 583
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 584 NGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKEATRKTH 763
           NGG++ DKV+WAREH EK +  +          +    +G+  +        K   RKTH
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243

Query: 764 KGLXKVACIGAWHPSRVSXTVXRAG 838
           +GL KVACIGAWHP+ V  TV RAG
Sbjct: 244 RGLRKVACIGAWHPANVQWTVARAG 268



 Score = 33.1 bits (72), Expect = 0.050
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 648 VDSVFAQDEMVDCIXXXXXXXXXXXXSRWHTKKLPVRHTRVLXKLPAL 791
           + S F Q+EM+D I            +RW TK+LP +  R L K+  +
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI 252


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  316 bits (777), Expect = 2e-87
 Identities = 148/265 (55%), Positives = 191/265 (72%)
 Frame = +2

Query: 44  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 223
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 224 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 403
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 404 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 583
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 584 NGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKEATRKTH 763
           NGG++ DKV+WAREH EK +  +          +    +G+  +        K   RKTH
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH 243

Query: 764 KGLXKVACIGAWHPSRVSXTVXRAG 838
           +GL KVACIGAWHP+ V  TV RAG
Sbjct: 244 RGLRKVACIGAWHPANVQWTVARAG 268



 Score = 33.1 bits (72), Expect = 0.050
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 648 VDSVFAQDEMVDCIXXXXXXXXXXXXSRWHTKKLPVRHTRVLXKLPAL 791
           + S F Q+EM+D I            +RW TK+LP +  R L K+  +
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI 252


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 205 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIFL 35
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P   V  IFL
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIFL 401


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect(2) = 0.90
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 303 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 455
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269



 Score = 20.6 bits (41), Expect(2) = 0.90
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 570 WKSNLTVVPSRTK*NGPENIWRNLSLVDSVFAQDEMV 680
           W+ N+    S        + + + SLVD  FA DE +
Sbjct: 277 WEKNIIYDESDVNKTNQSSFFIDKSLVDIDFAFDENI 313


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 497 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 607
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 589 WYHRGQSEMGQRTSGETYPWSILCLPKMKWLT 684
           W  R  S +       TYP++   +PK K+++
Sbjct: 214 WMERSNSFLNPTPDNSTYPYAATIIPKDKYVS 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,654
Number of Sequences: 5004
Number of extensions: 73656
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)