Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C01
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 310 9e-85
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 307 7e-84
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.1
05_04_0324 - 20273797-20274261 29 4.6
03_02_0733 - 10801380-10802009 28 8.1
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 310 bits (761), Expect = 9e-85
Identities = 147/272 (54%), Positives = 191/272 (70%), Gaps = 1/272 (0%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ + F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 565
NW + + G+K I+ +KM +Y S+VRVIAHTQ++ +K +QKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAH 180
Query: 566 IMEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKE 745
+MEIQ+NGGTI DKV + + EK IP + +G+ +
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 746 ATRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
RKTH+GL KVACIGAWHP+RVS TV RAGQ
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 648 VDSVFAQDEMVDCIXXXXXXXXXXXXSRWHTKKLPVRHTRVLXKLPAL 791
VD+VF +DEM+D I +RW +LP + R L K+ +
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 307 bits (754), Expect = 7e-84
Identities = 146/272 (53%), Positives = 190/272 (69%), Gaps = 1/272 (0%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
++ + F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 565
NW + + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAH 180
Query: 566 IMEIQLNGGTIEDKVKWAREHLEKPIPGRFCVCPR*NG*LHWCHQGQRIQRCHFSLAHKE 745
+MEIQ+NGGTI DKV + + EK IP + +G+ +
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 746 ATRKTHKGLXKVACIGAWHPSRVSXTVXRAGQ 841
RKTH+GL KVACIGAWHP+RVS TV RAGQ
Sbjct: 241 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 648 VDSVFAQDEMVDCIXXXXXXXXXXXXSRWHTKKLPVRHTRVLXKLPAL 791
VD+VF +DEM+D I +RW +LP + R L K+ +
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACI 255
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 463 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 579
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 122 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 295
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 296 VGYIETPHGLRAL 334
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>03_02_0733 - 10801380-10802009
Length = 209
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +2
Query: 29 VAQKNFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
VA+ HP H + ++ RRH+GK A P K L A AG +V+ P
Sbjct: 35 VAELMMDHPRHFVIDARDLQQQRRHKGKAGA-PPPPGGKVAPLPADHVLGAGGVYVLL-P 92
Query: 209 DRPGSKINKKEIVEAVT 259
K++ +E A+T
Sbjct: 93 ATTRGKVSAEEARRALT 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,016,743
Number of Sequences: 37544
Number of extensions: 523322
Number of successful extensions: 1192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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