Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B24
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0373 + 2783596-2784933                                           31   0.93 
06_03_1310 + 29238644-29240260                                         31   0.93 
01_04_0116 + 16189250-16189411,16189577-16190104                       31   1.6  
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333...    30   2.1  
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    29   3.8  
04_01_0041 - 464695-464850,467485-469029                               29   6.6  
01_05_0227 - 19512866-19514983                                         29   6.6  
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867...    28   8.7  
07_03_0525 - 19044978-19045508                                         28   8.7  
03_01_0606 - 4461646-4462623                                           28   8.7  
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    28   8.7  

>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 92  EEEKALTKEGMAEAAETXKGTISSMNRS 9
           E+++ LTK G +  +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +1

Query: 571 HQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLSSEAPSAYLTPLVTGHG*RGFAP 750
           H+ P   H PP+   P P  P +P      P   PP  SE+P + + P  +     G +P
Sbjct: 381 HRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASP 438


>01_04_0116 + 16189250-16189411,16189577-16190104
          Length = 229

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 750 PYFQVNDESQASRLIXRHSRILGSPPPITP-S*KXXXGHNQPSST 881
           P   VN+ SQ   L+  H     SPPP+ P S      H++PS+T
Sbjct: 4   PSLTVNESSQPPPLVVSHRLPSFSPPPLPPVSGTALCRHHRPSAT 48


>01_01_0448 -
           3332238-3332330,3332414-3332481,3332570-3332618,
           3332716-3332798,3332900-3333023,3333389-3333486,
           3333555-3333634,3333712-3333782,3333872-3333953,
           3334158-3334237,3334365-3334416,3334843-3334958
          Length = 331

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 543 LAILATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSISVSHP 713
           +A  +T+TR S PR H PTTP   S  +    +    +RA    +V+  G+  + HP
Sbjct: 1   MAASSTATRLSPPRLHAPTTP---SPHLPLRRSRFSPLRAAKLEAVLTIGTHLIPHP 54


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +1

Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
           TE  +N V V  L   SS   GY D  + ++   V      +  K+ V +D    TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224

Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
           +  +N+L  P        G  L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 421 TVD 429
            +D
Sbjct: 100 PLD 102


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>11_04_0307 +
           16185405-16185713,16185847-16185942,16186626-16186730,
           16186938-16187090,16188395-16188478,16188566-16188694,
           16188986-16189165,16189555-16189677,16189678-16189794,
           16189889-16190053
          Length = 486

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 553 WLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPP 678
           WL+ P    P     PP +  P P +P  PY  + +P   PP
Sbjct: 12  WLNSPLWSAP-----PPSSSSPSPPVPPDPYGADLSPPPPPP 48


>07_03_0525 - 19044978-19045508
          Length = 176

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 27/86 (31%), Positives = 40/86 (46%)
 Frame = +3

Query: 528 SSHPPLAILATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRAGVKASVVIRGSISVS 707
           S  P    +AT+ R +  RF   TT D T+ +     A     R  V+  VV+  + S S
Sbjct: 21  SRRPERVTIATTGRDAARRF--ATTADSTAAAA----AAAPPSRERVRRRVVLPPASS-S 73

Query: 708 HPPRHWTWLKGVRPPYFQVNDESQAS 785
           + PRH T L     P+ + N+E  A+
Sbjct: 74  YRPRHATALDVKWSPWIENNEERSAA 99


>03_01_0606 - 4461646-4462623
          Length = 325

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 23/85 (27%), Positives = 33/85 (38%)
 Frame = +3

Query: 480 HPFILSHYYWRSRPYASSHPPLAILATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVR 659
           HPF   H++WR  P     PP A  A     S   F       LT+ +    + +   V+
Sbjct: 168 HPFATPHWHWRLLP----SPPFAFTADDALDSIRNFFQDDDDFLTAYTAVGGSCIWMTVQ 223

Query: 660 AGVKASVVIRGSISVSHPPRHWTWL 734
           + V A+    G+ S       WT L
Sbjct: 224 STVAAAA---GTYSFDTSTATWTKL 245


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +1

Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
           Q   I  +  ++ L       N  TV  + N    + GY+    +N+   +    PSLK 
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256

Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
               D C  T ++ +EG++ L   S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,399,733
Number of Sequences: 37544
Number of extensions: 577106
Number of successful extensions: 1600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)