Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B20
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   9.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   9.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 358 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG 227
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 76  SSLKNHYFHCFITYSVGRK 132
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 70  ARSSLKNHYFHCFI 111
           A   L+N Y+ CFI
Sbjct: 37  ANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 70  ARSSLKNHYFHCFI 111
           A   L+N Y+ CFI
Sbjct: 37  ANDRLRNQYYDCFI 50


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 579 SPIKRERXLGLNRXETGXXYPTDG 650
           SP++RE+  G     T     TDG
Sbjct: 313 SPLRREKDRGSREYPTSNATDTDG 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,083
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)