Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B19
         (871 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               130   1e-30
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         130   1e-30
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  130 bits (314), Expect = 1e-30
 Identities = 55/73 (75%), Positives = 67/73 (91%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           +KAGMTH++RE ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAE
Sbjct: 48  FKAGMTHILREVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAE 107

Query: 360 HMSEDCRRRFYKN 398
           H+SE+C+RRFYKN
Sbjct: 108 HLSEECKRRFYKN 120



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 29/42 (69%), Positives = 35/42 (83%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFI
Sbjct: 5   FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFI 46


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  130 bits (314), Expect = 1e-30
 Identities = 55/73 (75%), Positives = 67/73 (91%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           +KAGMTH++RE ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAE
Sbjct: 96  FKAGMTHILREVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAE 155

Query: 360 HMSEDCRRRFYKN 398
           H+SE+C+RRFYKN
Sbjct: 156 HLSEECKRRFYKN 168



 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = +2

Query: 29  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           P      F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFI
Sbjct: 46  PKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFI 94



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  LSSSMSHRKFSAPRSWVYGILSQK 93
           L   MSHRKF APR    G L +K
Sbjct: 44  LEPKMSHRKFEAPRHGSLGFLPRK 67


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 29  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 157
           P C T+  QHP   S+ F  KK +  ++G  K++ K  P+KPV
Sbjct: 191 PVCDTDGQQHPNLCSLHFQGKKLA--YKGFCKSYCK-SPTKPV 230


>SB_14298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 429 NKALIFREESSFCRSDVDSLQTYAP-PRQSTER 334
           N A+I +    +C  D+   Q YAP  RQ++ R
Sbjct: 392 NDAVILKRRECYCEKDLSKTQLYAPSDRQASNR 424


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,546,348
Number of Sequences: 59808
Number of extensions: 434648
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)