Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B19
         (871 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC...   144   1e-34
BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   140   2e-33
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   140   2e-33
AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD...   140   2e-33
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   140   2e-33
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   139   5e-33
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   139   5e-33

>AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC,
           isoform C protein.
          Length = 125

 Score =  144 bits (350), Expect = 1e-34
 Identities = 61/77 (79%), Positives = 71/77 (92%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           YKAGMTH+VRE DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+
Sbjct: 36  YKAGMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQ 95

Query: 360 HMSEDCRRRFYKNCSPL 410
           H+SE+CRRRFYKNCS +
Sbjct: 96  HLSEECRRRFYKNCSSI 112



 Score = 68.9 bits (161), Expect = 8e-12
 Identities = 30/34 (88%), Positives = 30/34 (88%)
 Frame = +2

Query: 74  MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           M FYPKKRS RHRGKVKAFPKDD SKPVHLT FI
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFI 34


>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  140 bits (340), Expect = 2e-33
 Identities = 66/121 (54%), Positives = 79/121 (65%)
 Frame = +3

Query: 36  VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 215
           ++ + FS P  G     PK+             K              YKAGMTH+VRE 
Sbjct: 12  MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 71

Query: 216 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 395
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 72  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 131

Query: 396 N 398
           N
Sbjct: 132 N 132


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  140 bits (340), Expect = 2e-33
 Identities = 66/121 (54%), Positives = 79/121 (65%)
 Frame = +3

Query: 36  VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 215
           ++ + FS P  G     PK+             K              YKAGMTH+VRE 
Sbjct: 1   MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60

Query: 216 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 395
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 61  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120

Query: 396 N 398
           N
Sbjct: 121 N 121


>AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD,
           isoform D protein.
          Length = 161

 Score =  140 bits (340), Expect = 2e-33
 Identities = 66/121 (54%), Positives = 79/121 (65%)
 Frame = +3

Query: 36  VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 215
           ++ + FS P  G     PK+             K              YKAGMTH+VRE 
Sbjct: 1   MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60

Query: 216 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 395
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 61  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120

Query: 396 N 398
           N
Sbjct: 121 N 121


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  140 bits (340), Expect = 2e-33
 Identities = 66/121 (54%), Positives = 79/121 (65%)
 Frame = +3

Query: 36  VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 215
           ++ + FS P  G     PK+             K              YKAGMTH+VRE 
Sbjct: 1   MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60

Query: 216 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 395
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 61  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120

Query: 396 N 398
           N
Sbjct: 121 N 121


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  139 bits (336), Expect = 5e-33
 Identities = 59/73 (80%), Positives = 68/73 (93%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           YKAGMTH+VRE DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+
Sbjct: 36  YKAGMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQ 95

Query: 360 HMSEDCRRRFYKN 398
           H+SE+CRRRFYKN
Sbjct: 96  HLSEECRRRFYKN 108



 Score = 68.9 bits (161), Expect = 8e-12
 Identities = 30/34 (88%), Positives = 30/34 (88%)
 Frame = +2

Query: 74  MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           M FYPKKRS RHRGKVKAFPKDD SKPVHLT FI
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFI 34


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  139 bits (336), Expect = 5e-33
 Identities = 59/73 (80%), Positives = 68/73 (93%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           YKAGMTH+VRE DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+
Sbjct: 36  YKAGMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQ 95

Query: 360 HMSEDCRRRFYKN 398
           H+SE+CRRRFYKN
Sbjct: 96  HLSEECRRRFYKN 108



 Score = 68.9 bits (161), Expect = 8e-12
 Identities = 30/34 (88%), Positives = 30/34 (88%)
 Frame = +2

Query: 74  MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           M FYPKKRS RHRGKVKAFPKDD SKPVHLT FI
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFI 34


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,636,898
Number of Sequences: 53049
Number of extensions: 634226
Number of successful extensions: 1329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)