Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B19
         (871 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   126   3e-29
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   120   1e-27
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   120   1e-27
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    33   0.33 
At1g29195.1 68414.m03572 expressed protein                             30   2.3  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  126 bits (303), Expect = 3e-29
 Identities = 54/73 (73%), Positives = 66/73 (90%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           YKAGMTH+VR+ ++PGSK++KKE  EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+
Sbjct: 49  YKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQ 108

Query: 360 HMSEDCRRRFYKN 398
           H+SE+ RRRFYKN
Sbjct: 109 HLSEELRRRFYKN 121



 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 30/42 (71%), Positives = 37/42 (88%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+
Sbjct: 6   FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFL 47


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  120 bits (290), Expect = 1e-27
 Identities = 53/73 (72%), Positives = 64/73 (87%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           YKAGMTH+VRE ++PGSK++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+
Sbjct: 49  YKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQ 108

Query: 360 HMSEDCRRRFYKN 398
           H+SE+ RRRFYKN
Sbjct: 109 HLSEEVRRRFYKN 121



 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 29/42 (69%), Positives = 35/42 (83%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFM 47


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  120 bits (290), Expect = 1e-27
 Identities = 53/73 (72%), Positives = 64/73 (87%)
 Frame = +3

Query: 180 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
           YKAGMTH+VRE ++PGSK++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+
Sbjct: 49  YKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQ 108

Query: 360 HMSEDCRRRFYKN 398
           H+SE+ RRRFYKN
Sbjct: 109 HLSEEVRRRFYKN 121



 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 29/42 (69%), Positives = 35/42 (83%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 175
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFM 47


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = -3

Query: 425 KLSSFERRAVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDL 246
           K SS +    F   T T  R+   P     A ++    ++N + T+ +  L  G++L+ L
Sbjct: 36  KFSSIKSSVSFSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGL 93

Query: 245 FLVDF*TGTVRFSNHVGH 192
           FL+ F       + H G+
Sbjct: 94  FLLSFSPTLAEIAAHAGY 111


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 183 KAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 284
           KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 44  KAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,654
Number of Sequences: 28952
Number of extensions: 303167
Number of successful extensions: 699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)