Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B17
         (894 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   1.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   7.5  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 514 TRGSRPLVEPGLNPMSSISPY 576
           T   R    P L+PMSS+ PY
Sbjct: 468 TSSKRQRTSPQLSPMSSLPPY 488


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 525 AATGLGLY--RRIVLRNPSPLSTPDVSNTDRRCSQNISWST 409
           AA G G +  ++     PSP STP    T R  + N ++S+
Sbjct: 58  AAVGKGFHPWKKSPQGAPSPSSTPSSLPTQRTSTSNPTYSS 98


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 218 NCLHDYFDIKHSPATLDCYHRPDLHQQEGNGTSS 319
           N +H   D      + DC++    ++QE   TSS
Sbjct: 656 NDVHSIVDDSDVGPSGDCFYENKFYRQEAQWTSS 689


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 608 NIPRRHGMNIAYGEIEDIGFN 546
           N+P    +++AY  I  + FN
Sbjct: 162 NLPELEDLDLAYNSISSLDFN 182


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 579 CVRGNRRHW 553
           C++GN +HW
Sbjct: 187 CLKGNAKHW 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,870
Number of Sequences: 336
Number of extensions: 5240
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)