Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B17
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    54   2e-07
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660...    34   0.13 
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008...    33   0.31 
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    31   1.6  
09_03_0154 + 12831120-12831222,12831761-12831858,12832019-128321...    28   8.7  
08_02_0483 + 17656376-17656806,17657246-17657423,17657556-176577...    28   8.7  

>09_04_0087 +
           14476539-14476675,14478876-14479635,14479720-14479871,
           14479958-14480024,14480632-14480831,14480915-14481068,
           14481585-14481669,14481766-14481857,14482575-14482766,
           14482867-14482992,14483072-14483125,14483494-14483550,
           14484509-14484606,14484703-14485038,14485116-14485203,
           14486891-14487016,14487082-14487138,14488054-14488133,
           14488228-14488270,14488948-14489034,14489331-14489420,
           14489996-14490054,14490141-14490231,14490330-14490495,
           14490662-14490755,14491787-14492909
          Length = 1537

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
 Frame = +3

Query: 180 YKQVFVXXXXXXXXXXXXIS--ILSTHLLHSIAIIDQTYISRKAMAQAVAEQFFGCFITM 353
           YKQVF+             S  I ++ +LH   +IDQ   +R  +A A+A Q+FG +   
Sbjct: 454 YKQVFLPPEMIVSPTSLGASTCIFNSDILHDEKVIDQIIDTRIKVAYALARQWFGIYTNA 513

Query: 354 QNWSDLWLAKGIPDYLCGLYSKKCFGNNAYRY 449
           +  +D WL  G+  +L   + K+  GNN  RY
Sbjct: 514 EEATDEWLLDGLAGFLTEHFVKRYLGNNEARY 545



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 62  VTHYCLPNLLQILKNTVRYLHEAFEFYEETLSTRYPY 172
           V+H CL   L  L+NT+ + H  +  YE+ L+  +P+
Sbjct: 415 VSHMCLSQSLSKLENTISFFHSVYSCYEDYLAASFPF 451


>02_02_0080 +
           6598427-6598663,6599246-6599391,6599567-6599669,
           6600407-6600593,6600699-6600792,6601290-6601443,
           6601751-6601855,6601937-6602053,6602248-6602361,
           6602891-6603073,6603207-6603486,6603565-6603686,
           6603763-6603860,6603941-6604118,6604439-6604553,
           6604656-6604723,6604825-6604902,6604986-6605060,
           6605156-6605338
          Length = 878

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 36/133 (27%), Positives = 56/133 (42%)
 Frame = +3

Query: 306 MAQAVAEQFFGCFITMQNWSDLWLAKGIPDYLCGLYSKKCFGNNAYRYWIHQELKEVMGY 485
           +A  +A Q+FG  +TM+ W+ LWL +G   ++  L +   F    +  W           
Sbjct: 312 VAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADNFFPE--WNVW-------TQFL 362

Query: 486 EEQYGGIVLDPWQPPASGTRIEPNVFYFPVRNVHTMSPRYIEVMRKKSHLVLRMLEQRIG 665
           EE   G  LD     A    IE +     V +V  +   +  +  +K   V+RML+  +G
Sbjct: 363 EESTTGFKLDAL---AGSHPIEVD-----VNHVDEIDEIFDAISYRKGAAVIRMLQSYLG 414

Query: 666 QELLLQVFNKQLA 704
            E     F K LA
Sbjct: 415 AE----TFQKSLA 423


>09_03_0039 +
           11799277-11799486,11799565-11799710,11800758-11800860,
           11800996-11801182,11801299-11801392,11801530-11801683,
           11801963-11802067,11802151-11802267,11802688-11802801,
           11803171-11803260,11803875-11804057,11809196-11809550,
           11809574-11809643,11809993-11810167,11810251-11810351,
           11810390-11810516,11810639-11810716,11811926-11812270
          Length = 917

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 306 MAQAVAEQFFGCFITMQNWSDLWLAKGIPDYL 401
           +A  +A Q+FG  +TM+ W+ LWL +G   ++
Sbjct: 303 VAHELAHQWFGNLVTMEWWTHLWLNEGFATWM 334


>03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,
            5368467-5368577,5368997-5369068,5369719-5369737,
            5369838-5371142,5371317-5371397,5372441-5372604,
            5373363-5373466,5373537-5373628,5374079-5374216,
            5374370-5374426,5374820-5375046
          Length = 1713

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 26   HLKLMFDPFMNEVTHYCLPNLLQILKNTVRYLHEAFEFYEETLSTRYPY 172
            +L L   P    V    +P L+  L N V +L   F FY E +   YPY
Sbjct: 1446 YLVLETVPGNKRVFKRTVPGLIGALFNIVLHLESPFIFYTERMPVHYPY 1494


>09_03_0154 +
           12831120-12831222,12831761-12831858,12832019-12832195,
           12832307-12832407,12832503-12832578,12832665-12832724,
           12832810-12832994,12833078-12833174,12833279-12833365,
           12833453-12833511,12833617-12833708,12833821-12833898,
           12834000-12834160,12834267-12834485
          Length = 530

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 2   TG*RWLLDHLKLMFD--PFMNEVTHYCLPNLLQILKNTVR 115
           TG RW  D + + F   PF+  +  Y L N ++   NTVR
Sbjct: 454 TGARWFNDMINVPFSSKPFVAGLVAYFLDNTIETHNNTVR 493


>08_02_0483 +
           17656376-17656806,17657246-17657423,17657556-17657717,
           17658723-17659280
          Length = 442

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +2

Query: 359 LVRSVASKRYTGLFMRTVLQEMFWEQRLSVLDTSGV 466
           L++S+   +Y G ++R+++QE+  + R+S   T+ V
Sbjct: 150 LLKSMMGPKYDGRYLRSIVQELLGDTRISQAITNVV 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,797,189
Number of Sequences: 37544
Number of extensions: 546274
Number of successful extensions: 1186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)