Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B17
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    66   3e-11
At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    34   0.11 
At1g19410.1 68414.m02418 hypothetical protein                          31   0.78 
At3g50710.1 68416.m05548 F-box family protein contains F-box dom...    28   7.3  

>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
 Frame = +3

Query: 180 YKQVFVXXXXXXXXXXXX--ISILSTHLLHSIAIIDQTYISRKAMAQAVAEQFFGCFITM 353
           YKQVF+              +SI S+H+L+   +IDQT  +R  +A A+A+Q+FG +IT 
Sbjct: 307 YKQVFLPPEMVVTSSTSGASLSIFSSHILYDERVIDQTIDTRIKLASALAKQWFGVYITP 366

Query: 354 QNWSDLWLAKGIPDYLCGLYSKKCFGNNAYRY 449
           ++ +D WL  G+  +L  ++ K+  GNN  RY
Sbjct: 367 ESPNDDWLLDGLAGFLTDMFIKQFLGNNEARY 398



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 15/37 (40%), Positives = 27/37 (72%)
 Frame = +2

Query: 62  VTHYCLPNLLQILKNTVRYLHEAFEFYEETLSTRYPY 172
           +++ CLP+ L  L+NT+ + HEA+ +YE+ LS  +P+
Sbjct: 268 ISNLCLPHDLSRLRNTMEFFHEAYSYYEDYLSANFPF 304


>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 33/133 (24%), Positives = 57/133 (42%)
 Frame = +3

Query: 306 MAQAVAEQFFGCFITMQNWSDLWLAKGIPDYLCGLYSKKCFGNNAYRYWIHQELKEVMGY 485
           +A  +A Q+FG  +TM+ W+ LWL +G   ++  L +   F    ++ W           
Sbjct: 305 VAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLATDSLFPE--WKIW-------TQFL 355

Query: 486 EEQYGGIVLDPWQPPASGTRIEPNVFYFPVRNVHTMSPRYIEVMRKKSHLVLRMLEQRIG 665
           +E   G+ LD  +        E +     V +   +   +  +  +K   V+RML+  +G
Sbjct: 356 DESTEGLRLDGLE--------ESHPIEVEVNHAAEIDEIFDAISYRKGASVIRMLQSYLG 407

Query: 666 QELLLQVFNKQLA 704
            E    VF K LA
Sbjct: 408 AE----VFQKSLA 416


>At1g19410.1 68414.m02418 hypothetical protein
          Length = 435

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 20  LDHLKLMFDPFMNEVTHYCLPNLLQILKNTVRYLHEAFEFYEETLSTRYP 169
           L+ L L +   M      CLP+L  +L   VRY+ E+F+  +E+ +  +P
Sbjct: 104 LETLALSYAILMVVPRMACLPSLKNLLLQGVRYVDESFQLLDESHTVCFP 153


>At3g50710.1 68416.m05548 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +2

Query: 335 RLFYNYAELVRSVASKRYTGLFMRTVLQEMFWEQRLSVLDTSGVERGD 478
           RL      L   V  K Y    +R+   E+   Q LS+LDTSG   GD
Sbjct: 174 RLLSGCPVLEELVLDKSYNSFHVRSFYVEIPTLQSLSILDTSGELYGD 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,713,766
Number of Sequences: 28952
Number of extensions: 429379
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)