Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B16
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.036
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    33   0.047
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   1.0  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    28   1.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.1  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   4.1  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   7.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 1/126 (0%)
 Frame = +3

Query: 279 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 458
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 459 VEGVNVLATP-SSSRITIGGLAPYASSHPPLANLGLXQXRIIKSPEFHTPNHPQT*XPIF 635
                V +TP +++  T     PY S+    +N  +     + S    T N   +   ++
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLY 599

Query: 636 XQFPLT 653
              P+T
Sbjct: 600 TSTPIT 605



 Score = 32.3 bits (70), Expect = 0.083
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 3/124 (2%)
 Frame = +3

Query: 291 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 464
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 465 GVNVLATP-SSSRITIGGLAPYASSHPPLANLGLXQXRIIKSPEFHTPNHPQT*XPIFXQ 641
              V +TP +++  T     PY S+    +N  +     + S    T N   +   ++  
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTS 542

Query: 642 FPLT 653
            P+T
Sbjct: 543 TPVT 546


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 536 PPSPGESRATSXPNHQIPRIPYXKP-PPNLXSNFPSIPLNPVLKGISXPGVKXPXG 700
           PP PG     +    Q P +P     PP + + FP  P  P + GI  PG   P G
Sbjct: 506 PPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGI--PGATAPPG 559


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 279 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 449
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 450 DVTVEGVNVLATPSSS 497
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 596 PYXKPPPNLXSNFPSIPLNPVLKGI 670
           P  K P +L SNF   PLNP L  I
Sbjct: 197 PNGKRPSSLQSNFSQFPLNPWLDNI 221


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 261  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 374
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 342 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 431
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 520 ARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 407
           A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 11  AEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 511 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 377
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 536 PPSPGESRATSXPNHQIPRIPYXKPPPNLXSNFPSIPL 649
           PP    SR ++ P    P +P   PP    S  PS+P+
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,326
Number of Sequences: 5004
Number of extensions: 55326
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)