Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B16
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                30   1.9  
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   3.3  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   4.4  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   4.4  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   29   5.8  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    28   7.6  

>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +2

Query: 536 PPSPGESRATSXPNHQIPRI---PYXKP-PPNLXSNFPSIPLNP 655
           PP+P      + PN  IP     PY  P PPNL    PS P NP
Sbjct: 271 PPAPPNPSIPAPPNPSIPLAPPNPYIPPAPPNLF--IPSAPPNP 312



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
 Frame = +2

Query: 530 IKPPSPGESRATSXPNHQIPRIPYXKPPPN----LXSNFPSIPLNPVLKGISXP 679
           I P  P  S+A + PN  +P  P     PN      S  PSIP  P    I  P
Sbjct: 229 IPPAPPNPSKAIATPNPPMPETPLPPATPNPFIPPASPNPSIPPAPPNPSIPAP 282


>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -1

Query: 783 RGGXNPPFXPXPPXXGG--GKKXXXGPF*XPXGXLTP 679
           RG   PP  P PP   G  GK+   GP   P G  TP
Sbjct: 261 RGDMGPPGHPGPPGVRGRRGKRGPPGPPGPPNGGATP 297


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 458 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 279
           C  +  P   +  W+F +  G K DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 278 KIE 270
           + E
Sbjct: 335 EEE 337


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 396 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 506
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +3

Query: 270 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 377
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +2

Query: 539 PSPGESRAT--SXPNHQIPRIP--YXKPPPNLXSNFPSIPLNPVLKGISXPGVKXPXGXQ 706
           PS   S AT    P+ + P +P    KPPP      P +PL P L G   PG   P    
Sbjct: 439 PSLRASAATLPPLPSDEPPPLPPDEEKPPPPPAPALPPLPLPPELPG--SPGDSPPATSP 496

Query: 707 KGP 715
           K P
Sbjct: 497 KQP 499


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 416 TSHS*PLLDYC*RHS*RSQCAGHPFILSHY 505
           T +   LL YC     R   AGHPF+L  Y
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGY 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,818,233
Number of Sequences: 59808
Number of extensions: 451469
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)