BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_FL5_B13 (922 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.079 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.079 EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10 EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10 EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10 EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10 EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10 EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10 AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 1.7 AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.0 AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 3.9 DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 5.2 DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 5.2 AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 5.2 DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.8 DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.8 AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 6.8 DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 9.0 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 28.7 bits (61), Expect = 0.079 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%) Frame = +2 Query: 122 MIDSLLATYDRDSPPELQNRSQP-DPAF*YMLTFV----SPSPPLRIQADLQMNWIDQRL 286 +++ LL++Y+ P + N S+P + F L + + L A L++ W+D L Sbjct: 58 LLNELLSSYNTLERP-VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNL 116 Query: 287 TWNAGEWG 310 WN E+G Sbjct: 117 QWNESEYG 124 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 28.7 bits (61), Expect = 0.079 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%) Frame = +2 Query: 122 MIDSLLATYDRDSPPELQNRSQP-DPAF*YMLTFV----SPSPPLRIQADLQMNWIDQRL 286 +++ LL++Y+ P + N S+P + F L + + L A L++ W+D L Sbjct: 58 LLNELLSSYNTLERP-VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNL 116 Query: 287 TWNAGEWG 310 WN E+G Sbjct: 117 QWNESEYG 124 >EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 6 protein. Length = 461 Score = 28.3 bits (60), Expect = 0.10 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310 L A L++ W+D L WN E+G Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56 >EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 461 Score = 28.3 bits (60), Expect = 0.10 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310 L A L++ W+D L WN E+G Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56 >EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 461 Score = 28.3 bits (60), Expect = 0.10 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310 L A L++ W+D L WN E+G Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56 >EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 461 Score = 28.3 bits (60), Expect = 0.10 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310 L A L++ W+D L WN E+G Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56 >EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 461 Score = 28.3 bits (60), Expect = 0.10 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310 L A L++ W+D L WN E+G Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 28.3 bits (60), Expect = 0.10 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310 L A L++ W+D L WN E+G Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56 >AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic acetylcholine receptorApisa2 subunit protein. Length = 541 Score = 24.2 bits (50), Expect = 1.7 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 5/94 (5%) Frame = +2 Query: 77 IASAAECENATSLSLMIDSLLATYDRDSPPELQNRSQPDPAF*YMLTFVSP----SPPLR 244 I SA C + D LL+ Y+R P N L+ + L Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68 Query: 245 IQADLQMNWIDQRLTWNAGEWGCSTGL-VSSERL 343 L+ W D + W+ E+G T L V SE + Sbjct: 69 TNVWLEHEWQDHKFQWDPAEYGGVTELYVPSEHI 102 >AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic acetylcholine receptoralpha-3 protein. Length = 537 Score = 23.4 bits (48), Expect = 3.0 Identities = 7/18 (38%), Positives = 11/18 (61%) Frame = +2 Query: 257 LQMNWIDQRLTWNAGEWG 310 ++ W D +L WN E+G Sbjct: 86 VEQRWNDYKLKWNPEEYG 103 >AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic acetylcholine receptoralpha7-1 protein. Length = 555 Score = 23.0 bits (47), Expect = 3.9 Identities = 6/18 (33%), Positives = 11/18 (61%) Frame = +2 Query: 257 LQMNWIDQRLTWNAGEWG 310 L++ W D + WN ++G Sbjct: 76 LKLEWNDVNMRWNVSDYG 93 >DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine receptor alpha3subunit protein. Length = 566 Score = 22.6 bits (46), Expect = 5.2 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = +2 Query: 257 LQMNWIDQRLTWNAGEWG 310 ++ +W D +L W+ E+G Sbjct: 77 VEQSWYDYKLKWDPKEYG 94 >DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine receptor alpha1subunit protein. Length = 601 Score = 22.6 bits (46), Expect = 5.2 Identities = 6/18 (33%), Positives = 11/18 (61%) Frame = +2 Query: 257 LQMNWIDQRLTWNAGEWG 310 ++ W D +L WN ++G Sbjct: 73 VEQEWNDYKLKWNPDDYG 90 >AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic acetylcholine Apisa7-2 subunit protein. Length = 461 Score = 22.6 bits (46), Expect = 5.2 Identities = 7/13 (53%), Positives = 8/13 (61%) Frame = +2 Query: 269 WIDQRLTWNAGEW 307 W D L WNA E+ Sbjct: 62 WTDHHLKWNASEF 74 >DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 22.2 bits (45), Expect = 6.8 Identities = 6/18 (33%), Positives = 11/18 (61%) Frame = +2 Query: 257 LQMNWIDQRLTWNAGEWG 310 ++ +W D +L W E+G Sbjct: 81 VEQSWYDYKLRWEPKEYG 98 >DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 22.2 bits (45), Expect = 6.8 Identities = 6/18 (33%), Positives = 11/18 (61%) Frame = +2 Query: 257 LQMNWIDQRLTWNAGEWG 310 ++ +W D +L W E+G Sbjct: 81 VEQSWYDYKLRWEPKEYG 98 >AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. Length = 735 Score = 22.2 bits (45), Expect = 6.8 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -1 Query: 322 PSATAPLPCVPSQS 281 PSA AP+P +P+ S Sbjct: 411 PSAGAPMPPIPNMS 424 >DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride channel protein. Length = 447 Score = 21.8 bits (44), Expect = 9.0 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Frame = +2 Query: 122 MIDSLLATYDRDSPPELQNRSQPDPAF*YMLTFVSPSPPLR-------IQADLQMNWIDQ 280 ++D++L YD P +N + PA + FV + +Q + W+D+ Sbjct: 35 VLDNILGGYDARIRPSGENATD-GPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDE 93 Query: 281 RLTWN 295 RL +N Sbjct: 94 RLRFN 98 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 140,791 Number of Sequences: 438 Number of extensions: 2128 Number of successful extensions: 22 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 22 length of database: 146,343 effective HSP length: 58 effective length of database: 120,939 effective search space used: 29992872 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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