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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B13
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    29   0.079
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    29   0.079
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    28   0.10 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    28   0.10 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    28   0.10 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    28   0.10 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    28   0.10 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    28   0.10 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   5.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   5.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   5.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   9.0  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 0.079
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +2

Query: 122 MIDSLLATYDRDSPPELQNRSQP-DPAF*YMLTFV----SPSPPLRIQADLQMNWIDQRL 286
           +++ LL++Y+    P + N S+P +  F   L  +      +  L   A L++ W+D  L
Sbjct: 58  LLNELLSSYNTLERP-VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNL 116

Query: 287 TWNAGEWG 310
            WN  E+G
Sbjct: 117 QWNESEYG 124


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 0.079
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +2

Query: 122 MIDSLLATYDRDSPPELQNRSQP-DPAF*YMLTFV----SPSPPLRIQADLQMNWIDQRL 286
           +++ LL++Y+    P + N S+P +  F   L  +      +  L   A L++ W+D  L
Sbjct: 58  LLNELLSSYNTLERP-VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNL 116

Query: 287 TWNAGEWG 310
            WN  E+G
Sbjct: 117 QWNESEYG 124


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
           L   A L++ W+D  L WN  E+G
Sbjct: 33  LTTNAWLKLEWVDYNLQWNESEYG 56


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
           L   A L++ W+D  L WN  E+G
Sbjct: 33  LTTNAWLKLEWVDYNLQWNESEYG 56


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
           L   A L++ W+D  L WN  E+G
Sbjct: 33  LTTNAWLKLEWVDYNLQWNESEYG 56


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
           L   A L++ W+D  L WN  E+G
Sbjct: 33  LTTNAWLKLEWVDYNLQWNESEYG 56


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
           L   A L++ W+D  L WN  E+G
Sbjct: 33  LTTNAWLKLEWVDYNLQWNESEYG 56


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
           L   A L++ W+D  L WN  E+G
Sbjct: 33  LTTNAWLKLEWVDYNLQWNESEYG 56


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
 Frame = +2

Query: 77  IASAAECENATSLSLMIDSLLATYDRDSPPELQNRSQPDPAF*YMLTFVSP----SPPLR 244
           I SA  C        + D LL+ Y+R   P   N           L+ +         L 
Sbjct: 9   ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68

Query: 245 IQADLQMNWIDQRLTWNAGEWGCSTGL-VSSERL 343
               L+  W D +  W+  E+G  T L V SE +
Sbjct: 69  TNVWLEHEWQDHKFQWDPAEYGGVTELYVPSEHI 102


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 LQMNWIDQRLTWNAGEWG 310
           ++  W D +L WN  E+G
Sbjct: 86  VEQRWNDYKLKWNPEEYG 103


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 LQMNWIDQRLTWNAGEWG 310
           L++ W D  + WN  ++G
Sbjct: 76  LKLEWNDVNMRWNVSDYG 93


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 257 LQMNWIDQRLTWNAGEWG 310
           ++ +W D +L W+  E+G
Sbjct: 77  VEQSWYDYKLKWDPKEYG 94


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 LQMNWIDQRLTWNAGEWG 310
           ++  W D +L WN  ++G
Sbjct: 73  VEQEWNDYKLKWNPDDYG 90


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 269 WIDQRLTWNAGEW 307
           W D  L WNA E+
Sbjct: 62  WTDHHLKWNASEF 74


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 LQMNWIDQRLTWNAGEWG 310
           ++ +W D +L W   E+G
Sbjct: 81  VEQSWYDYKLRWEPKEYG 98


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 LQMNWIDQRLTWNAGEWG 310
           ++ +W D +L W   E+G
Sbjct: 81  VEQSWYDYKLRWEPKEYG 98


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 322 PSATAPLPCVPSQS 281
           PSA AP+P +P+ S
Sbjct: 411 PSAGAPMPPIPNMS 424


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +2

Query: 122 MIDSLLATYDRDSPPELQNRSQPDPAF*YMLTFVSPSPPLR-------IQADLQMNWIDQ 280
           ++D++L  YD    P  +N +   PA   +  FV     +        +Q   +  W+D+
Sbjct: 35  VLDNILGGYDARIRPSGENATD-GPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDE 93

Query: 281 RLTWN 295
           RL +N
Sbjct: 94  RLRFN 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,791
Number of Sequences: 438
Number of extensions: 2128
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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