Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B13
         (922 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28560.1 68414.m03515 snRNA activating complex family protein...    29   3.3  
At2g16190.1 68415.m01855 hypothetical protein                          29   4.3  
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro...    29   5.7  

>At1g28560.1 68414.m03515 snRNA activating complex family protein
           similar to snRNA activating protein complex 50 kDa
           subunit (SNAPc 50 kDa subunit) (Proximal sequence
           element-binding transcription factor beta subunit)
           (PSE-binding factor beta subunit) (PTF beta subunit)
           (Swiss-Prot:Q92966) [Homo sapiens]
          Length = 375

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 317 CYSPTPLRSKSVVGRSNSFEDLPVFAAVDSDSRMLACIKMQGQVD 183
           C+S T    K VV     FE +     +D++   L    +QGQVD
Sbjct: 92  CFSKTSETGKDVVAPPEGFEQMQSLRFIDNNYTKLKPSDIQGQVD 136


>At2g16190.1 68415.m01855 hypothetical protein
          Length = 303

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 385 DGSPXLAVPXQAXHQAFRGHQPSATAPLPCVPSQSLVDPIHL 260
           +G+  + VP QA  QA      S   PLP  PS+ ++ P  L
Sbjct: 65  NGTNHVIVPTQALEQAVPPPNVSVRTPLPYQPSEEVLPPPQL 106


>At5g48360.1 68418.m05975 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 782

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +2

Query: 29  VDDLYYSCYQFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPELQNRSQPDPAF*Y 208
           + + +++ + FLLTCA  S     +  +LS  +      YD +SP  L       P F  
Sbjct: 1   MQNFWFAIFFFLLTCAPPSPLSYASTVTLSRRL-----LYDYESPLPLPLSPISPPFFPL 55

Query: 209 MLTFVSPSPPL 241
             +  SP PPL
Sbjct: 56  ESSPPSPPPPL 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,875,438
Number of Sequences: 28952
Number of extensions: 188292
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)