Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B12
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 32 0.53
01_06_0456 + 29521282-29522064 32 0.70
03_05_0183 - 21681673-21682524 30 2.8
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 5.0
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362... 29 5.0
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 5.0
06_03_1448 + 30235336-30236763 29 6.6
06_03_1443 + 30182018-30183445 29 6.6
06_03_1440 + 30166515-30167942 29 6.6
06_03_1437 + 30151030-30152457 29 6.6
06_03_1429 + 30100834-30102261 29 6.6
06_03_1425 + 30084383-30085810 29 6.6
06_03_1420 - 30053713-30055140 29 6.6
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 6.6
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 8.7
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 32.3 bits (70), Expect = 0.53
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 64 GSRMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLXELDS 216
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L+S
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -1
Query: 461 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 339
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 689 SQAFIATLLFDPSMSALPIIAKQNSPSVGLFTHQKE 796
SQAF A LL D + +A+P++ Q P+ T +E
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPETETETEE 264
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 361 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 540
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 541 RVEQKGK 561
RV+ G+
Sbjct: 114 RVDNGGR 120
>03_05_0934 -
28935728-28935859,28936000-28936122,28936172-28936284,
28936363-28936430,28936517-28936600,28936937-28936980,
28937061-28937204,28937518-28937582,28937722-28937814,
28938132-28938262,28938375-28938394,28938904-28938987,
28939157-28939330,28940106-28940195,28940293-28940364,
28941318-28941365,28941458-28941570,28942786-28942849,
28942943-28943016,28943162-28943201
Length = 591
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 301 ESSGFSATIARNDLPLMLHLSCLLTMPD*SQAQXGSSFPADSPKPVP 161
+ +GFS TI R+D ++ L P G+ PA P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 628 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 735
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 329
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 329
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 329
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 329
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 329
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 329
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 329
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 394 TTLHAWNETPCARRYY 347
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 402 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 491
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 481 PPQSNSPPGSVLEPDHAGVLNGDE 410
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,422,105
Number of Sequences: 37544
Number of extensions: 544312
Number of successful extensions: 1557
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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