Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B11
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    36   0.043
01_06_0456 + 29521282-29522064                                         33   0.40 
06_03_1448 + 30235336-30236763                                         29   3.8  
06_03_1443 + 30182018-30183445                                         29   3.8  
06_03_1440 + 30166515-30167942                                         29   3.8  
06_03_1437 + 30151030-30152457                                         29   3.8  
06_03_1429 + 30100834-30102261                                         29   3.8  
06_03_1425 + 30084383-30085810                                         29   3.8  
06_03_1420 - 30053713-30055140                                         29   3.8  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.6  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 158  DENSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLFELDS 316
            D+ +  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +F L+S
Sbjct: 1391 DQGNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443


>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -2

Query: 567 SPAWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 439
           S AW+C  P +G+RG  +RRR  P    S R  R    +T+RP + S A
Sbjct: 10  SRAWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58


>06_03_1448 + 30235336-30236763
          Length = 475

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 566 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 429
           PPP ++ +   A +  GD+R+  V  LH W+E     R YR   +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171


>06_03_1443 + 30182018-30183445
          Length = 475

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 566 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 429
           PPP ++ +   A +  GD+R+  V  LH W+E     R YR   +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171


>06_03_1440 + 30166515-30167942
          Length = 475

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 566 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 429
           PPP ++ +   A +  GD+R+  V  LH W+E     R YR   +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171


>06_03_1437 + 30151030-30152457
          Length = 475

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 566 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 429
           PPP ++ +   A +  GD+R+  V  LH W+E     R YR   +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171


>06_03_1429 + 30100834-30102261
          Length = 475

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 566 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 429
           PPP ++ +   A +  GD+R+  V  LH W+E     R YR   +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171


>06_03_1425 + 30084383-30085810
          Length = 475

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 566 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 429
           PPP ++ +   A +  GD+R+  V  LH W+E     R YR   +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171


>06_03_1420 - 30053713-30055140
          Length = 475

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 566 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 429
           PPP ++ +   A +  GD+R+  V  LH W+E     R YR   +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 494 TTLHAWNETPCARRYY 447
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,246,162
Number of Sequences: 37544
Number of extensions: 570427
Number of successful extensions: 1628
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)