Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B11
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    28   7.8  
U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal enha...    23   9.7  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 582 PPQSNSPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 433
           PP+  SP    PR  +R S  RRR  PP     R +R   R P+     R
Sbjct: 216 PPRRGSPRRGSPRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKER 265


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -1

Query: 481 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 347
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 162 SSPDHHAIVFSDSGRNHHGLGSEDPRDSHPPDRGRTPAKLD 40
           S+P  + + F  S  NH  +  EDP     PDR R    L+
Sbjct: 454 SAPPAYTLPFGGSTPNHEPMDLEDPVPPPRPDRPRASTPLN 494


>U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform b protein.
          Length = 169

 Score = 23.4 bits (48), Expect(2) = 9.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 603 RYSLTDVPPQSNSPAWQC 550
           RY++  + P+ N  +W+C
Sbjct: 69  RYNIYQIAPERNFKSWRC 86



 Score = 23.0 bits (47), Expect(2) = 9.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 504 PPRHHSARLERNTVRPPI 451
           PPRHH A +E   VR  I
Sbjct: 120 PPRHHVAEIEFIKVRGEI 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,102,545
Number of Sequences: 27780
Number of extensions: 417178
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)