Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B08
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 28 1.4
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 28 1.4
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 28 1.4
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 27 2.5
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 27 2.5
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 4.3
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 4.3
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 26 5.7
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 5.7
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 7.5
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 9.9
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 170 SKLPSYGIPEGLCKWIASFLDG 235
S+LP YGI GL W A++ G
Sbjct: 81 SELPRYGIKWGLANWTAAYATG 102
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 342 IYRMKSVGESTEPCGTPALMV 280
+YR KSV ES EP G P L +
Sbjct: 140 LYREKSVEESDEPSGIPILFI 160
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 170 SKLPSYGIPEGLCKWIASFLDG 235
S+LP YGI GL W A++ G
Sbjct: 81 SELPRYGIKWGLANWTAAYATG 102
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 8 DXTVRFPVTVAQLAIFLYTLLT 73
D + +FP+ + L FLY+LLT
Sbjct: 279 DGSYKFPIPIVLLCFFLYSLLT 300
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = +2
Query: 269 SDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSR 433
S +T+ + VP+ S FI Y + +LSI + C+ ++ ++++ +
Sbjct: 39 SSRLTVRSAVPEKSAFGSIEFIFYFSVILSILTIACFKIHYVSSPKHPNYKNIEK 93
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 212 WIASFLDGRSITVVVDGDCSDTMTIN-AGVPQGS 310
W SFL G+ +TVV + S+ IN +P GS
Sbjct: 519 WSESFLAGKRLTVVKNQAVSNDDNINMVNIPDGS 552
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 293 GVPQGSVLSPTLFILYINDML 355
G+PQGS+LS L Y+ D++
Sbjct: 703 GIPQGSILSSFLCHFYMEDLI 723
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 351 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 265
MSL+Y +SVG T PCG+ + ++ Q
Sbjct: 1 MSLVYLFQSVGILT-PCGSAGAIAYITSQ 28
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 293 GVPQGSVLSPTLFILYINDM 352
G PQGS++SP L +Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 302 QGSVLSPTLFILYINDMLSIDGMHCY 379
+ S L+ +L LY+ D + ID H Y
Sbjct: 502 KSSTLTESLAFLYLEDNMPIDAFHLY 527
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 491 APESSPLQTQVLIVSLAPRSERDSDGRYIAHPPCCHPHS 375
AP SS Q QV + RS ++S + PP HP S
Sbjct: 38 APSSSSSQNQVELDEQFARSLQNSQSSSYSLPPFDHPPS 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,968
Number of Sequences: 5004
Number of extensions: 57879
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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