Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B08
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 36 0.030
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 35 0.091
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 32 0.64
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 30 2.6
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 29 3.4
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 4.5
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 29 6.0
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772... 28 7.9
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 28 7.9
01_01_0985 - 7788318-7789571 28 7.9
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 36.3 bits (80), Expect = 0.030
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 158 RALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFIL 337
++L L G P+ WI + L V++ G +T G+ QG LSP LFIL
Sbjct: 53 QSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFIL 112
Query: 338 YINDML 355
+ D+L
Sbjct: 113 -VADVL 117
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 13 DSTVSXHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFD 144
D T GR + L+Y T K + L + LD AKAFD
Sbjct: 5 DQTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFD 48
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 34.7 bits (76), Expect = 0.091
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 155 HRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFI 334
H A+LS + G P +W+ S V+++G ++ GV QG LS LF+
Sbjct: 467 HSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQGVPLSLLLFV 526
Query: 335 L 337
L
Sbjct: 527 L 527
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 31.9 bits (69), Expect = 0.64
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 161 ALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILY 340
+L L G PE WI L V+++G + G+ QG LS LFIL
Sbjct: 1069 SLFKILAVRGFPENWISWIKGLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLSSYLFIL- 1127
Query: 341 INDML 355
+ D+L
Sbjct: 1128 VADVL 1132
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 13 DSTVSXHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFD 144
D T GR + L+Y T K + + V LD KAFD
Sbjct: 1020 DQTGFLKGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFD 1063
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 254 VDGDCSDTMTINAGVPQGSVLSPTLFIL 337
++G+ +DT+ + G+ QG +SP LF+L
Sbjct: 301 INGELTDTVVPSRGIRQGDPISPYLFLL 328
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 173 KLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSD 274
KLP + +C W A +L G+S + +VD +
Sbjct: 563 KLPEADDQKSMCNWAAEYLKGKSYSKLVDASLKE 596
>08_02_0104 + 12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
+H + + G+ + L W A +G + +V D +CS T I+ V + P
Sbjct: 905 YHTQIEYRWGGEGLRKTLICWAAEKSEGGQVVLVEDEECSSTYCISFRVKNAEAVPP--- 961
Query: 332 ILYINDMLSIDGMHCY 379
+ + + I + C+
Sbjct: 962 VKELRKTMRIQALRCH 977
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 28.7 bits (61), Expect = 6.0
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +2
Query: 140 STGXWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLS 319
+TG +H +L +YG+P G F +G +VV D D + GV +G +LS
Sbjct: 339 ATGFYHDLMLKIRSTYGLPLGY------FSEGPDSSVVPDKDGKKVV----GVKKG-LLS 387
Query: 320 PTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKL 463
++Y+ D+ G++ GD Y + + S+ + + L
Sbjct: 388 CYRCLIYLGDLTRYKGLY-------GDVDYASREYAAASIYYKEAASL 428
>07_03_1528 +
27474973-27475289,27476890-27477073,27477081-27477261,
27477270-27478206,27478384-27479035,27479352-27479798
Length = 905
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 400 IPRAVIRIAM--HAINRQHVIDIQDEKRGGEHRTLWNASVNGHGI 272
IP A++R+++ + + + + D+K GE T++ + V G GI
Sbjct: 297 IPAALVRVSLAGYRLAEHNYFGVDDQKNFGESLTIFYSMVLGQGI 341
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +2
Query: 158 RALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGD----CSDTMTINAGVPQGSVLSPT 325
++LL+ S+ +P WIA+ +D S +VVD D + I G+P G + +
Sbjct: 165 KSLLNFQSSF-VPNQFASWIANHVDVSSSDIVVDDKVIPLTEDCVHIILGLPVGGIEISS 223
Query: 326 LFILYINDMLSIDG 367
F L N +L G
Sbjct: 224 NFELGKNKILETFG 237
>01_01_0985 - 7788318-7789571
Length = 417
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 523 SIQPVKDTSLRVHCEXGXLCHGAAIPRSIPATFRXYWDTWGS 648
++QPV S+ C G A+ R IP R WD W S
Sbjct: 122 TVQPVSPPSVVGGCYFQP--RGPALSRYIPCVLRKKWDDWKS 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,822,289
Number of Sequences: 37544
Number of extensions: 448037
Number of successful extensions: 1304
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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