Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B08
(828 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 64 3e-10
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 64 3e-10
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 55 1e-07
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 55 1e-07
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 55 1e-07
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 55 1e-07
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 54 2e-07
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 54 2e-07
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 51 2e-06
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 51 2e-06
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 50 3e-06
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 47 4e-05
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 47 4e-05
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 46 5e-05
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 46 5e-05
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 45 1e-04
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 45 1e-04
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 45 1e-04
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 44 2e-04
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 44 2e-04
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 44 2e-04
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 44 2e-04
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 44 2e-04
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 43 6e-04
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 41 0.002
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 35 0.12
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 63.7 bits (148), Expect = 3e-10
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
WH LL KL G P L K + +FL R +V ++ S +NAGVPQGSVL PTLF
Sbjct: 618 WHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLF 677
Query: 332 ILYINDMLSIDG--MHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKW 505
++ +D+ + +ADD+ + S S + + ++E++ KW
Sbjct: 678 NIFTHDIPQATNCVLSLFADDAA-----VYSAGFSYSEINQSMQSYLNELDI---YYKKW 729
Query: 506 GELNLVQFNPLKTQVCAFTAXKXP 577
++ NP KT FT + P
Sbjct: 730 ----KIKINPNKTNAIFFTKRRKP 749
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 63.7 bits (148), Expect = 3e-10
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
WH LL KL G P L K + +FL R +V ++ S +NAGVPQGSVL PTLF
Sbjct: 566 WHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLF 625
Query: 332 ILYINDMLSIDG--MHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKW 505
++ +D+ + +ADD+ + S S + + ++E++ KW
Sbjct: 626 NIFTHDIPQATNCVLSLFADDAA-----VYSAGFSYSEINQSMQSYLNELDI---YYKKW 677
Query: 506 GELNLVQFNPLKTQVCAFTAXKXP 577
++ NP KT FT + P
Sbjct: 678 ----KIKINPNKTNAIFFTKRRKP 697
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 55.2 bits (127), Expect = 1e-07
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTM-TINAGVPQGSVLSPTL 328
WH LL KL S IP L + ++L R+ +V +DG+ + + I AGVPQGS+L P L
Sbjct: 194 WHDGLLYKL-SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVL 252
Query: 329 FILYINDM 352
+ +Y +DM
Sbjct: 253 YSIYSSDM 260
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 55.2 bits (127), Expect = 1e-07
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTM-TINAGVPQGSVLSPTL 328
WH LL KL S IP L + ++L R+ +V +DG+ + + I AGVPQGS+L P L
Sbjct: 641 WHDGLLYKL-SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVL 699
Query: 329 FILYINDM 352
+ +Y +DM
Sbjct: 700 YSIYSSDM 707
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 55.2 bits (127), Expect = 1e-07
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTM-TINAGVPQGSVLSPTL 328
WH LL KL S IP L + ++L R+ +V +DG+ + + I AGVPQGS+L P L
Sbjct: 641 WHDGLLYKL-SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVL 699
Query: 329 FILYINDM 352
+ +Y +DM
Sbjct: 700 YSIYSSDM 707
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 55.2 bits (127), Expect = 1e-07
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTM-TINAGVPQGSVLSPTL 328
WH LL KL S IP L + ++L R+ +V +DG+ + + I AGVPQGS+L P L
Sbjct: 641 WHDGLLYKL-SRLIPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVL 699
Query: 329 FILYINDM 352
+ +Y +DM
Sbjct: 700 YSIYSSDM 707
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 54.4 bits (125), Expect = 2e-07
Identities = 31/67 (46%), Positives = 38/67 (56%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
WH LL K P L + SFL+ R+ V VDG S I AGVPQGSVL PTL+
Sbjct: 595 WHPGLLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLY 653
Query: 332 ILYINDM 352
++ +DM
Sbjct: 654 SVFASDM 660
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 54.4 bits (125), Expect = 2e-07
Identities = 31/67 (46%), Positives = 38/67 (56%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
WH LL K P L + SFL+ R+ V VDG S I AGVPQGSVL PTL+
Sbjct: 397 WHPGLLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLY 455
Query: 332 ILYINDM 352
++ +DM
Sbjct: 456 SVFASDM 462
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 51.2 bits (117), Expect = 2e-06
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
WH L+SK+ P + S+L+ R V V S + AGVPQGSVL P L+
Sbjct: 594 WHDGLISKVKKL-FPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLY 652
Query: 332 ILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGE 511
++ D+ + H A Y +L S ++ ++ L ++ W +
Sbjct: 653 SVFTADLPCPNAYHMADPRKALLATYADDIALLYS--SNCCNEAARGLQEYLTTLAAWCK 710
Query: 512 LNLVQFNPLKTQVCAFTAXKXPFVMAP-QFQGVSL-QPS 622
+++ NP KT FT V AP + +GV L QPS
Sbjct: 711 RWILKVNPQKTINPCFTLKTLSPVTAPIELEGVILDQPS 749
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 50.8 bits (116), Expect = 2e-06
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
W L+ K+ +P+ + K + S+LD R V S TI AGVPQGSVL P L+
Sbjct: 130 WLDGLMFKIIQL-LPQNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILY 188
Query: 332 ILYINDM 352
LY D+
Sbjct: 189 TLYTADI 195
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 50.4 bits (115), Expect = 3e-06
Identities = 27/67 (40%), Positives = 37/67 (55%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
W L+ K+ +PE K + S+L R V + S TI AGVPQGSVL PTL+
Sbjct: 591 WLDGLMFKI-KISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLY 649
Query: 332 ILYINDM 352
++Y D+
Sbjct: 650 LIYTADI 656
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 46.8 bits (106), Expect = 4e-05
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Frame = +2
Query: 161 ALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILY 340
A+L +L +GI L I +F+ RS V ++ S++ ++ G+PQGS LS LF++
Sbjct: 596 AVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIA 655
Query: 341 INDMLSIDGMH--CYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVS 499
I D+ I H Y DA I + + + V+E+ +++ E+ NS G S
Sbjct: 656 IEDINDIVTRHKDIYISLYADDA-IIFTKIKNINTVREKFLEILQEI-NSWGATS 708
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 46.8 bits (106), Expect = 4e-05
Identities = 26/67 (38%), Positives = 34/67 (50%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
WH L K+ +P + S+L+GR V S + AGVPQGSVL P L+
Sbjct: 593 WHIGLQLKIKQT-LPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLY 651
Query: 332 ILYINDM 352
LY +DM
Sbjct: 652 CLYSHDM 658
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 46.4 bits (105), Expect = 5e-05
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVD-GDCSDTMTINAGVPQGSVLSPTL 328
WH LL KL +P L + S+L R+ V G+ S T I AGVPQGS L P L
Sbjct: 638 WHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLL 696
Query: 329 FILYINDM 352
+ ++ +DM
Sbjct: 697 YSIFSSDM 704
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 46.4 bits (105), Expect = 5e-05
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVD-GDCSDTMTINAGVPQGSVLSPTL 328
WH LL KL +P L + S+L R+ V G+ S T I AGVPQGS L P L
Sbjct: 650 WHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLL 708
Query: 329 FILYINDM 352
+ ++ +DM
Sbjct: 709 YSIFSSDM 716
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 45.2 bits (102), Expect = 1e-04
Identities = 26/66 (39%), Positives = 33/66 (50%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
W LL K+ +P+ K + S+L R + D S I AGVPQGSVL P L+
Sbjct: 589 WLDGLLFKIIKL-LPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILY 647
Query: 332 ILYIND 349
LY D
Sbjct: 648 TLYTAD 653
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 45.2 bits (102), Expect = 1e-04
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Frame = +2
Query: 140 STGXWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLS 319
+T W +L + + G+P+ + I ++ R + V + D + ++AGVPQGSVL
Sbjct: 563 NTARWP-IILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTE-DGPRSHQVSAGVPQGSVLG 620
Query: 320 PTLFILYINDMLSID-----GMHCYADD 388
P L+ + + +LSI +HC+ADD
Sbjct: 621 PILWNIMYDGILSISKPRGVELHCFADD 648
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 44.8 bits (101), Expect = 1e-04
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +2
Query: 161 ALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILY 340
+++ +L + + K+I +F+ R ITV V S + + G+PQGS +S LF++
Sbjct: 588 SIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIA 647
Query: 341 INDMLSIDGMH------CYADD 388
N + +I +H YADD
Sbjct: 648 FNKLSNIISLHKEIKFNAYADD 669
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 44.4 bits (100), Expect = 2e-04
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVD-GDCSDTMTINAGVPQGSVLSPTL 328
WH LL KL +P L + S+L R+ V G+ S I AGVPQGS L P L
Sbjct: 522 WHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPIL 580
Query: 329 FILYINDM 352
+ ++ +DM
Sbjct: 581 YSIFSSDM 588
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 44.4 bits (100), Expect = 2e-04
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVD-GDCSDTMTINAGVPQGSVLSPTL 328
WH LL KL +P L + S+L R+ V G+ S I AGVPQGS L P L
Sbjct: 638 WHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPIL 696
Query: 329 FILYINDM 352
+ ++ +DM
Sbjct: 697 YSIFSSDM 704
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 44.4 bits (100), Expect = 2e-04
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVD-GDCSDTMTINAGVPQGSVLSPTL 328
WH LL KL +P L + S+L R+ V G+ S I AGVPQGS L P L
Sbjct: 638 WHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPIL 696
Query: 329 FILYINDM 352
+ ++ +DM
Sbjct: 697 YSIFSSDM 704
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 44.4 bits (100), Expect = 2e-04
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVD-GDCSDTMTINAGVPQGSVLSPTL 328
WH LL KL +P L + S+L R+ V G+ S I AGVPQGS L P L
Sbjct: 600 WHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPIL 658
Query: 329 FILYINDM 352
+ ++ +DM
Sbjct: 659 YSIFSSDM 666
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 44.4 bits (100), Expect = 2e-04
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVD-GDCSDTMTINAGVPQGSVLSPTL 328
WH LL KL +P L + S+L R+ V G+ S I AGVPQGS L P L
Sbjct: 638 WHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPIL 696
Query: 329 FILYINDM 352
+ ++ +DM
Sbjct: 697 YSIFSSDM 704
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 42.7 bits (96), Expect = 6e-04
Identities = 25/66 (37%), Positives = 32/66 (48%)
Frame = +2
Query: 152 WHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLF 331
W LL K+ +P+ K + S+L + D S I AGVPQGSVL P L+
Sbjct: 589 WLDGLLFKIIKL-LPQNTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILY 647
Query: 332 ILYIND 349
LY D
Sbjct: 648 TLYTAD 653
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 41.1 bits (92), Expect = 0.002
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +2
Query: 155 HRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFI 334
H ++ L +YG P+G ++ + +G ++ DG S+ GV QG LSP LF
Sbjct: 492 HASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFN 551
Query: 335 LYINDML 355
L ++ +L
Sbjct: 552 LVMDRLL 558
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 35.1 bits (77), Expect = 0.12
Identities = 29/106 (27%), Positives = 52/106 (49%)
Frame = +2
Query: 161 ALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILY 340
A LS+L G E + W SF GR V+ + + + G PQGS+ P ++ +
Sbjct: 590 AALSRLADLGCRE-MGLW-QSFFSGRR-AVIRSSSGTVEVPVTRGCPQGSISGPFIWDIL 646
Query: 341 INDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVE 478
++ +L +C D + + SR+V++E+ ++L+S VE
Sbjct: 647 MDVLLQRLQPYCQLSAYADDLLLL-VEGNSRAVLEEKGAQLMSIVE 691
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,442,905
Number of Sequences: 53049
Number of extensions: 720166
Number of successful extensions: 2058
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2057
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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