Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B08
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    58   6e-09
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    57   2e-08
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    56   3e-08
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    49   5e-06
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    36   0.035
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    28   7.1  
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    28   7.1  
Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.     28   9.4  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 7/164 (4%)
 Frame = +2

Query: 173  KLPSYGIPEGLCKWIASFLDGRSITVVVDGDCS-DTMTINAGVPQGSVLSPTLFILYIND 349
            KL  +G+    C W   FL+ R+ +V ++   S ++  I++GVPQGSV  P LFIL+IN+
Sbjct: 839  KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898

Query: 350  MLSID-----GMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGEL 514
            +L ID      + C+ADD       I H                + ++NS+  +  W +L
Sbjct: 899  LL-IDLAPTINISCFADDVK-----IFHTD-------------PTIIQNSIDIIVSWSKL 939

Query: 515  NLVQFNPLKTQVCAF-TAXKXPFVMAPQFQGVSLQPSXSIGILG 643
            N +   P K+ + A  T  K     +    GV + PS ++  LG
Sbjct: 940  NELPLAPTKSALLALGTRNKN---QSYSVDGVPITPSSTVRDLG 980


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
 Frame = +2

Query: 155 HRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFI 334
           H  LL KL S    + L  W+  FL  RS  V +    S       GVPQG+VLSP LF 
Sbjct: 30  HDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFG 89

Query: 335 LYINDMLSI--DGMHC--YADDS 391
           +Y+ND+ SI  + + C  +ADD+
Sbjct: 90  IYVNDISSILPEKVACKQFADDT 112


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 155 HRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTM-TINAGVPQGSVLSPTLF 331
           H  LL KL  +GI    C W   FL  R+ +V V+      +  I++GVP+GSV  P LF
Sbjct: 9   HSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLF 68

Query: 332 ILYINDML 355
           +++IN +L
Sbjct: 69  LIFINSLL 76


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = +2

Query: 176 LPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDML 355
           + + GI   +  W+ ++L  R I    D   S   T+  GVPQGSV+SP LF  Y+ DM 
Sbjct: 493 MEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMP 552

Query: 356 SIDG--MHCYADDSTGDAR 406
           +     +  YADD +  AR
Sbjct: 553 TQQDTMLISYADDMSIIAR 571


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y113G7B.12 protein.
          Length = 1042

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 155  HRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDC-SDTMTINAGVPQGSVLSPTLF 331
            H  L+SKL  + +   L  W    +  ++ +V V+    S+      G P+GS     +F
Sbjct: 903  HEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQIGAPRGSESRQFMF 962

Query: 332  ILYINDML 355
            +++IN +L
Sbjct: 963  LVFINSLL 970


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 351 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 265
           +SL    KS GE T+PCGTP    + SE+
Sbjct: 50  ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78


>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 459 FDRLSCTTLRERL*WPIYRASPVLSSA*QCMPSIDSMSLIYRMKSVGESTEPCGTPA 289
           F ++ C +LR R   P+ R+ P+  S      S+ ++  ++ M   GE+  P G  A
Sbjct: 283 FSQMCCNSLRRR---PVRRSHPISPSPGTSPSSVVTIQNVFGMTLSGEANGPAGQEA 336


>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 270 LIP*PLTLAFHKVRCSPPRFSSCISMTCCLLMAC 371
           L+P P+TL F ++ C P  F+  +    C +  C
Sbjct: 17  LLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDC 50


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 270 LIP*PLTLAFHKVRCSPPRFSSCISMTCCLLMAC 371
           L+P P+TL F ++ C P  F+  +    C +  C
Sbjct: 90  LLPGPVTLMFERLPCLPAEFNPGVVNVACRVPDC 123


>Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical
           protein K08H2.1 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 515 NLVQFNPLKTQVCAFTAXK 571
           NLVQ +PLKT +C+F   K
Sbjct: 42  NLVQPHPLKTSICSFVLVK 60


>AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 515 NLVQFNPLKTQVCAFTAXK 571
           NLVQ +PLKT +C+F   K
Sbjct: 38  NLVQPHPLKTSICSFVLVK 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,579,514
Number of Sequences: 27780
Number of extensions: 344454
Number of successful extensions: 949
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)