Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B08
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    31   0.93 
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ...    29   5.0  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    28   6.6  
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa...    28   8.7  

>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 26/67 (38%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
 Frame = +2

Query: 500 KWGELNLVQFNPLKTQ----VCAFTAXKXPFVMAPQFQGVSLQPSXSIG--ILGGXHFXR 661
           KW E  L QF P KT     VCA T    PF M P    V  Q   S+   I    HF R
Sbjct: 544 KWHEHTLAQF-PRKTSLTCNVCALTHSSCPFYMCPPCDFVVHQKCISLPRVIRISRHFHR 602

Query: 662 CPXSXSF 682
              + SF
Sbjct: 603 IHFTPSF 609


>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
           contains similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 582

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 418 MADISRIP-RAVIRIAMHAINRQHVIDIQDEKRGGEHRTLWNASVNGHGI 272
           +A+   IP R V  IAM+A  +Q V  + +E +G +   +W   ++  GI
Sbjct: 158 IAETYEIPDRCVEAIAMNACRKQLVSGLSEELKGRDCLEMWTEELSALGI 207


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +2

Query: 500 KWGELNLVQF---NPLKTQVCAFTAXKXPFVMAPQFQGVSLQPSXSI 631
           KW E  L  F    PL   VCA T  + PF + P    V+ Q   S+
Sbjct: 275 KWHEHTLSLFPRKTPLTCSVCALTHTRCPFYICPPCDFVAHQSCFSL 321


>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 388

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 460 F*SSLLHHAPRETLMADISRIPRAVI 383
           F S+ LHH PR  L+   SR+ R VI
Sbjct: 2   FSSTTLHHLPRPNLLLPSSRVCRKVI 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,026
Number of Sequences: 28952
Number of extensions: 332013
Number of successful extensions: 919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)