Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B07
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte upt...    30   2.6  
AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.      30   2.6  
Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z67737-1|CAA91536.2|  399|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte uptake
           defective protein4 protein.
          Length = 433

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 177 VVNLTLHLRHANIRESESTVRIQADLQMNWIXXRLSWN 290
           +V++  H+ H +I + E T+ +   + M W    L W+
Sbjct: 74  IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111


>AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.
          Length = 433

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 177 VVNLTLHLRHANIRESESTVRIQADLQMNWIXXRLSWN 290
           +V++  H+ H +I + E T+ +   + M W    L W+
Sbjct: 74  IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111


>Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical
           protein T01H10.6 protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 186 LTLHLRHANIRESESTVRIQADLQMNWIXXRLSWNA 293
           L  +L+   ++E E  V +  +L   W   RLSWN+
Sbjct: 79  LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114


>Z67737-1|CAA91536.2|  399|Caenorhabditis elegans Hypothetical
           protein T01H10.1 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 195 HLRHANIRESESTVRIQADLQMNWIXXRLSWNA 293
           +L+   + E E  V +  +L   W   RLSWNA
Sbjct: 81  NLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNA 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,303,476
Number of Sequences: 27780
Number of extensions: 184604
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)