Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B07
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.41 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.94 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 180 VNLTLHLRHANIRESESTVRIQADLQMNWIXXRLSWNA 293
           ++  L ++H N+ E   TV     L++ W    L+W +
Sbjct: 62  IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 38  YIILLPFLLTCAIAS-AAECENATSLSLMIDSLLAT 142
           Y ILL  L+TC I S +  C   T  S + D ++AT
Sbjct: 3   YSILLSLLITCLICSPSVHC--GTRPSFVSDEMIAT 36


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 210 NIRESESTVRIQADLQMNWIXXRLSWNAXXVG 305
           ++ E    +   A L++ W+   L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 210 NIRESESTVRIQADLQMNWIXXRLSWNAXXVG 305
           ++ E    +   A L++ W+   L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 210 NIRESESTVRIQADLQMNWIXXRLSWNAXXVG 305
           ++ E    +   A L++ W+   L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 210 NIRESESTVRIQADLQMNWIXXRLSWNAXXVG 305
           ++ E    +   A L++ W+   L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 210 NIRESESTVRIQADLQMNWIXXRLSWNAXXVG 305
           ++ E    +   A L++ W+   L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 210 NIRESESTVRIQADLQMNWIXXRLSWNAXXVG 305
           ++ E    +   A L++ W+   L WN    G
Sbjct: 25  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 210 NIRESESTVRIQADLQMNWIXXRLSWNAXXVG 305
           ++ E    +   A L++ W+   L WN    G
Sbjct: 93  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +3

Query: 210 NIRESESTVRIQADLQMNWIXXRLSWNAXXVG 305
           ++ E    +   A L++ W+   L WN    G
Sbjct: 93  DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,973
Number of Sequences: 438
Number of extensions: 2127
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)