Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B05
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.6  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   8.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   8.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -2

Query: 478 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG-VLNGDERFRHVTTLH 302
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G   +     R  ++++
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89

Query: 301 AWNETPCARRYYRPRTASA 245
            +     A  +++ + A A
Sbjct: 90  PYVSAAAAHHHHQQQQAVA 108


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 727 QLTFXLDG*TIPTLGEFCFAMIGR 656
           Q+T+ LDG  +PT G F   MIG+
Sbjct: 452 QVTWALDGFALPTNGRF---MIGQ 472


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 727 QLTFXLDG*TIPTLGEFCFAMIGR 656
           Q+T+ LDG  +PT G F   MIG+
Sbjct: 452 QVTWALDGFALPTNGRF---MIGQ 472


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 196 SSLKNHYFHCFITYSVGRK 252
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 175 VGDRFARSSLKNHYFHCFI 231
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 175 VGDRFARSSLKNHYFHCFI 231
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 203 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 93
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,513
Number of Sequences: 438
Number of extensions: 5372
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)