Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B03
(860 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 48 1e-07
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 46 4e-07
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 45 7e-07
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 45 7e-07
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 45 7e-07
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 32 0.007
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 26 0.33
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 7.2
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 47.6 bits (108), Expect = 1e-07
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 319 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 495
++ +LW+PDV++ N+A G + V +NGS ++ + M + +P D
Sbjct: 80 ITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDD 139
Query: 496 QTCTFKFGSRMHNSDEMDFVID 561
Q C KFGS ++ +++D V++
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161
Score = 22.6 bits (46), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 150 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXMG 302
ES P ++ LTL + ++ E + A L + W D L WN G
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYG 73
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 46.0 bits (104), Expect = 4e-07
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 319 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 495
++ +LW+PDV++ N+A G + V +NGS ++ + + + +P D
Sbjct: 80 ITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDD 139
Query: 496 QTCTFKFGSRMHNSDEMDFVID 561
Q C KFGS ++ +++D V++
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161
Score = 22.6 bits (46), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 150 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXMG 302
ES P ++ LTL + ++ E + A L + W D L WN G
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYG 73
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 45.2 bits (102), Expect = 7e-07
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 319 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 495
++ +LW+PDV++ N+A G + V + GS ++ + M + +P D
Sbjct: 80 ITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDD 139
Query: 496 QTCTFKFGSRMHNSDEMDFVID 561
Q C KFGS ++ +++D V++
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 45.2 bits (102), Expect = 7e-07
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 319 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 495
++ +LW+PDV++ N+A G + V + GS ++ + M + +P D
Sbjct: 80 ITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDD 139
Query: 496 QTCTFKFGSRMHNSDEMDFVID 561
Q C KFGS ++ +++D V++
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 45.2 bits (102), Expect = 7e-07
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 319 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 495
++ +LW+PDV++ N+A G + V + GS ++ + M + +P D
Sbjct: 80 ITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDD 139
Query: 496 QTCTFKFGSRMHNSDEMDFVID 561
Q C KFGS ++ +++D V++
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161
Score = 22.6 bits (46), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 150 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXMG 302
ES P ++ LTL + ++ E + A L + W D L WN G
Sbjct: 25 ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYG 73
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 31.9 bits (69), Expect = 0.007
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +1
Query: 301 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 453
G T V SE +W PD +N ATT+ ++ RV ++GS++ RL I+
Sbjct: 108 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSITRSIRLTIT 164
Query: 454 TPISMQLDNWPNDMQTCTFKFGS 522
M L P D Q C + S
Sbjct: 165 ASCPMNLQYLPMDRQLCHIEIES 187
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 391 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 492
A+ + N + SW + ++ + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 7.2
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 438 LYPG-DGAVIRYTGAESVVPGGGC 370
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,233
Number of Sequences: 336
Number of extensions: 4404
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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