Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B03
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr...    29   4.0  
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr...    29   4.0  
At3g02000.1 68416.m00160 glutaredoxin family protein contains IN...    29   4.0  
At3g63060.1 68416.m07083 circadian clock coupling factor, putati...    29   5.3  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   7.0  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   7.0  
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ...    28   9.2  

>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 352

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 165 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXM 299
           S +VVN  +H+ H  +    STV++L  +++ W  K   W  G M
Sbjct: 210 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQGPM 250


>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 345

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 165 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXM 299
           S +VVN  +H+ H  +    STV++L  +++ W  K   W  G M
Sbjct: 203 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQGPM 243


>At3g02000.1 68416.m00160 glutaredoxin family protein contains
           INTERPRO Domain IPR002109, Glutaredoxin
           (thioltransferase)
          Length = 136

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 567 NIQYVRVRSVGCDGSVQCGAXPGPWRGGKLAWQM 668
           +IQ   +R +GC GS   G+ P  + GGKL   M
Sbjct: 79  DIQRALIRLLGCSGSSSPGSLPVVFIGGKLVGAM 112


>At3g63060.1 68416.m07083 circadian clock coupling factor, putative
           similar to gb:AAK56924 circadian clock coupling factor
           ZGT {Nicotiana tabacum}
          Length = 272

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +1

Query: 487 NDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMFESGAWDVTDLSSAVXSQDRGEVGSSRGK 666
           N  +   F   SR+ NS +     ++ +  +FES +WD+  L + + S  R     +R  
Sbjct: 13  NTNRRLKFNQPSRLPNSGKSGIENERVLVLVFESISWDIHTLCT-IASLSRRFCAIARRI 71

Query: 667 CSRCLSGKRAPGXXA 711
             R L   RAPG  A
Sbjct: 72  LWRRLCVNRAPGMVA 86


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 403 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 314
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 403 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 314
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 597

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 342 PPQAFRGHQPSAAAPFXLRSNSVVCRSNSFEDLPVSA 232
           PP  F      AAA    RS++   RS SF+  PV++
Sbjct: 457 PPHGFESSAAMAAAVMNARSSAFAKRSLSFKPAPVAS 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,734,809
Number of Sequences: 28952
Number of extensions: 409217
Number of successful extensions: 1144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)