Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B02
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   210   2e-55
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   209   3e-55
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    28   1.3  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   7.1  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   7.1  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  210 bits (512), Expect = 2e-55
 Identities = 93/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 34  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKSVHLTAFIGYKAGMTHVVREP 213
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SK VHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 394 N 396
           N
Sbjct: 121 N 121



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 19/39 (48%), Positives = 30/39 (76%)
 Frame = +1

Query: 601 KSIEKDFKKMIRYCSVVRVIXHTQMKLLKQRQKKAHIME 717
           +SI ++ +++ +YCSVVRV+ HTQ++     QKKAH+ME
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180



 Score = 33.5 bits (73), Expect = 0.035
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +2

Query: 695 KRRLTLWKIQLNGGTIEDKVK*AXKHLEKPI 787
           +++  L +IQ+NGG++ DKV+ A +H EK +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTV 203


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  209 bits (511), Expect = 3e-55
 Identities = 92/121 (76%), Positives = 108/121 (89%)
 Frame = +1

Query: 34  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKSVHLTAFIGYKAGMTHVVREP 213
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SK VHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 394 N 396
           N
Sbjct: 121 N 121



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 19/39 (48%), Positives = 30/39 (76%)
 Frame = +1

Query: 601 KSIEKDFKKMIRYCSVVRVIXHTQMKLLKQRQKKAHIME 717
           +SI ++ +++ +YCSVVRV+ HTQ++     QKKAH+ME
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180



 Score = 33.5 bits (73), Expect = 0.035
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +2

Query: 695 KRRLTLWKIQLNGGTIEDKVK*AXKHLEKPI 787
           +++  L +IQ+NGG++ DKV+ A +H EK +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTV 203


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 499 PSSLIVERRLLGNYMHKVTYSRHINKALIFREESSFCRSDVDSLQT 362
           P++ +   ++LGNY+  +T+   ++ A  F  E  +C+  +  + T
Sbjct: 580 PTTSVQPSQILGNYVTGITFMNKVDYATYFSAE-EYCKQGIHMIPT 624


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -3

Query: 210 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 46
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 468 LVTICTK*HTLGILIKLSSFERRAVFVEATSTVFRHMLRPDS 343
           ++T+C    T  + + LSS E    FV +T + F   + P S
Sbjct: 328 VITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,884
Number of Sequences: 5004
Number of extensions: 66279
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)