Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B02
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 201 4e-52
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 200 1e-51
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 32 0.60
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.0
05_04_0324 - 20273797-20274261 30 2.4
01_05_0125 - 18382402-18382761,18382863-18383036 29 3.2
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 9.7
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 201 bits (491), Expect = 4e-52
Identities = 87/121 (71%), Positives = 106/121 (87%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKSVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SK HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 394 N 396
N
Sbjct: 121 N 121
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKMIRYCSVVRVIXHTQMKLLK-QRQKKAHIME 717
+ + G+K I+ +KM +Y S+VRVI HTQ++ +K +QKKAH+ME
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLME 183
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 695 KRRLTLWKIQLNGGTIEDKVK*AXKHLEKPI 787
+++ L +IQ+NGGTI DKV K EK I
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEI 206
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 200 bits (487), Expect = 1e-51
Identities = 86/121 (71%), Positives = 106/121 (87%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKSVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +K HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 394 N 396
N
Sbjct: 121 N 121
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKMIRYCSVVRVIXHTQMKLLK-QRQKKAHIME 717
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K +QKKAH+ME
Sbjct: 137 YDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLME 183
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 695 KRRLTLWKIQLNGGTIEDKVK*AXKHLEKPI 787
+++ L +IQ+NGGTI DKV K EK I
Sbjct: 176 QKKAHLMEIQINGGTIADKVDYGYKFFEKEI 206
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 13 SLRLSSSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKSVHLT 165
S+ S+S+ H + P+ S+ G P +++ + KVK K P +VH+T
Sbjct: 233 SMEPSTSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 606 NRKRFQEDDPLL*CCKSHXPHSNEAV--KTATKEG 704
N +RF +DPLL CC H P+ A +TAT G
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGATCDRTATVWG 331
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 127 FPKDDPSKSVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 300
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 301 VGYIETPHGLRAL 339
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 409 REESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 278
R+ S ++ +L PPR ST R+V E C+ + R + +E
Sbjct: 38 RQTMSRLYDELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/63 (20%), Positives = 34/63 (53%)
Frame = -2
Query: 457 MHKVTYSRHINKALIFREESSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 278
+ +++ ++ ++++++ E + RSD+++ A +S E VHE S+ ++ PS
Sbjct: 2797 LEELSQTKSVSQSIVANAEETSTRSDIETPAMDASESKSPESDVHELSERVEFMGPTPSA 2856
Query: 277 ESR 269
+
Sbjct: 2857 NEK 2859
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,571,652
Number of Sequences: 37544
Number of extensions: 445952
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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