Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B02
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 206 1e-53
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 197 8e-51
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 197 8e-51
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 35 0.054
At1g29195.1 68414.m03572 expressed protein 30 1.5
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 28 6.1
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 206 bits (503), Expect = 1e-53
Identities = 89/121 (73%), Positives = 107/121 (88%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKSVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+K LT+F+GYKAGMTH+VR+
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 394 N 396
N
Sbjct: 121 N 121
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/46 (47%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Frame = +1
Query: 583 QDELGRKSIEKDFKKMIRYCSVVRVIXHTQMKLLK-QRQKKAHIME 717
+ E G+K I+ +KM +YCSV+RV+ HTQ++ +K +QKKAH+ E
Sbjct: 138 ETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNE 183
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 197 bits (480), Expect = 8e-51
Identities = 87/121 (71%), Positives = 103/121 (85%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKSVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +K TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 394 N 396
N
Sbjct: 121 N 121
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/47 (44%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKMIRYCSVVRVIXHTQMKLLK-QRQKKAHIME 717
+ E G+K I+ +KM +Y +V+RV+ HTQ++ +K +QKKAH+ME
Sbjct: 137 YDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMME 183
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 695 KRRLTLWKIQLNGGTIEDKVK*AXKHLEKPI 787
+++ + +IQ+NGGTI KV A EK I
Sbjct: 176 QKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 197 bits (480), Expect = 8e-51
Identities = 87/121 (71%), Positives = 103/121 (85%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKSVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +K TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 394 N 396
N
Sbjct: 121 N 121
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/47 (44%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +1
Query: 580 WQDELGRKSIEKDFKKMIRYCSVVRVIXHTQMKLLK-QRQKKAHIME 717
+ E G+K I+ +KM +Y +V+RV+ HTQ++ +K +QKKAH+ME
Sbjct: 137 YDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMME 183
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 695 KRRLTLWKIQLNGGTIEDKVK*AXKHLEKPI 787
+++ + +IQ+NGGTI KV A EK I
Sbjct: 176 QKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 35.1 bits (77), Expect = 0.054
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -3
Query: 423 KLSSFERRAVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDL 244
K SS + F T T R+ P A ++ ++N + T+ + L G++L+ L
Sbjct: 36 KFSSIKSSVSFSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGL 93
Query: 243 FLVDF*TGTVRFSNHVGHTGLITD 172
FL+ F + H G+ ++ D
Sbjct: 94 FLLSFSPTLAEIAAHAGYDYVVVD 117
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 160 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 282
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 692 DKRRLTLWKIQLNGGTIEDKVK*AXKHL 775
D++RLTLWK Q++ KVK HL
Sbjct: 684 DEKRLTLWKHQMDRDAETSKVKSNFNHL 711
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,353,814
Number of Sequences: 28952
Number of extensions: 359834
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -