Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A22
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.37 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.5  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   6.0  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   7.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 222 VRVHRANTGRSSNELDRQTTELERR 296
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 400 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 537
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +1

Query: 1   Y*IDQLS*NVDDLYYSCYXFLLTCAIASAAECENATSLSLMIDSLLATYDRDPPPDSKI- 177
           Y +D +S N+   Y   +   L     SA        L L +D LLAT+ + PP  S + 
Sbjct: 61  YLLDSISKNLGAPYTYFFGLHLFSTFMSAYTVVEPR-LRLKLDQLLATWKQRPPNSSSLE 119

Query: 178 -VVN--LTLHLRHANIRESESTVRIQADLQMN 264
            V +  +T  + +A ++   + +R Q+ L  N
Sbjct: 120 PVFSPIVTAKIENALLKYKSTILRHQSPLLAN 151


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 484 WPNDMQTCTFKFGSRMHNSDQMDFVIDKXIYSM 582
           WP D+ T    FG+     D  D + D+ +Y M
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLM 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,153
Number of Sequences: 5004
Number of extensions: 57765
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)