Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A22
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.17
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 30 2.1
12_01_0524 - 4167867-4168445 29 3.6
07_03_1747 + 29188568-29188715,29188793-29189541 29 3.6
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 29 3.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.3
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.4
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.4
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.4
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 324 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 160
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 96 RKRNITVPHDRLAPRNVRSGPPPRLQNRSQPDPAF 200
RKR HD SGPPPR Q R QP P +
Sbjct: 197 RKRQRCAVHDADVESTSSSGPPPRRQ-RQQPHPDY 230
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 321 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 142
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 141 CEERVDHEGQ*C 106
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 377 PPPGTTLSAPVYLITAPSPG*SAWTLALQFPCS*TIGPTTCRLARSSSVLG 529
PPP TT++ V L TA + S + QF C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 64 LTCAIASAAECENATSLSL-MIDSLLATYDRDP 159
L C I S C+N++S+++ +I SL+ +D DP
Sbjct: 177 LLCQIGSDLACQNSSSVTMSIIKSLIGHFDLDP 209
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 222 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 338
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 228 VHRANTGRSSNELDRQTTELERRGVG 305
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 406 GRGERSPRRWLQPRLAVPRQASTSVPRTP 320
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 403 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 281
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,808,825
Number of Sequences: 37544
Number of extensions: 540057
Number of successful extensions: 1684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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