Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A21
         (867 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    48   7e-08
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    47   2e-07
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    46   4e-07
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    46   5e-07
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    44   2e-06
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    44   2e-06
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.33 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.58 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.8  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   7.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   7.2  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   9.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.5  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 48.4 bits (110), Expect = 7e-08
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
 Frame = +3

Query: 231 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 404
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N+A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 405 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 527
           G +     V +NGS  ++      +   M +  +P D Q C
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 46.8 bits (106), Expect = 2e-07
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
 Frame = +3

Query: 231 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 404
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N+A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 405 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 527
           G +     V +NGS  ++      +   + +  +P D Q C
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 46.0 bits (104), Expect = 4e-07
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = +3

Query: 231 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 404
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+PDV++ N+A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 405 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 527
           G +     V + GS  ++      +   M +  +P D Q C
Sbjct: 102 GTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 45.6 bits (103), Expect = 5e-07
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
 Frame = +3

Query: 129 SLSLMIDSLLATYDRDSPPD---SKIVVNLTLH-LRHANIRESESTVRIQADLQMNWIDK 296
           ++S ++DS   +YD+   P+     + V +T++ L  +++ E +    +    +  W D 
Sbjct: 40  NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99

Query: 297 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 449
           RL++     G  T  V SE    +W PD   +N        ATT+ ++    RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155

Query: 450 SWIKRLDISTPISMQLDNWPNDMQTCTFQV 539
           +   RL I+    M L   P D Q C  ++
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEI 185


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 447 VSWIKRLDISTPISMQLDNWPNDMQTC 527
             ++      +   M +  +P D Q C
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 447 VSWIKRLDISTPISMQLDNWPNDMQTC 527
             ++      +   M +  +P D Q C
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHC 142


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 414 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 515
           A+   +  N + SW + ++  + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = -3

Query: 253 VDSDSRMLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 74
           V S+S       CR     I +    ++  V+    + +DS  AF+      +AQV    
Sbjct: 56  VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115

Query: 73  NKNNISRRHFMTT 35
           N  N + R   TT
Sbjct: 116 NGTNKNMRRLSTT 128


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -3

Query: 235 MLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQ 89
           +++ L C +  T +L S GE+R ++   +     S  + S    + +A+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAE 276


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 461 LYPG-DGAVIRYTGAESVVPGGGC 393
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -3

Query: 721 RGXXPXRHXEHCHAXFHLAXG 659
           R   P     HCH  FH+  G
Sbjct: 660 RADNPGYWLFHCHFLFHIVIG 680


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 313 QGSGAAALGWCPRN 354
           + S A ALGW P N
Sbjct: 153 KASTAQALGWAPTN 166


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 691 HCHAXFHLAXG 659
           HCH  FH+  G
Sbjct: 670 HCHFLFHIVIG 680


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,770
Number of Sequences: 336
Number of extensions: 3667
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)