Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A18
         (908 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    29   5.6  
At5g07660.1 68418.m00877 structural maintenance of chromosomes (...    29   5.6  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   7.4  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   7.4  

>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 663 CHAXLPPRHGPWAXHRTGQMPSHPTLLTRTYCIFF-CQSRNPFR 535
           CH+ L    G W    TGQ  S  + +    C+ F C++R   R
Sbjct: 32  CHSNLQIEFGEWVNFITGQNGSGKSAILTALCVAFGCRARGTQR 75


>At5g07660.1 68418.m00877 structural maintenance of chromosomes
           (SMC) family protein similar to SMC-like protein (MIM)
           [Arabidopsis thaliana] GI:5880614; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1058

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 663 CHAXLPPRHGPWAXHRTGQMPSHPTLLTRTYCIFF-CQSRNPFR 535
           CH+ L    G W    TGQ  S  + +    C+ F C++R   R
Sbjct: 33  CHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQR 76


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 399 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 310
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 399 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 310
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,214,093
Number of Sequences: 28952
Number of extensions: 373802
Number of successful extensions: 960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)