Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A17
         (896 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   3.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.3  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   5.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.9  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +1

Query: 22  IRDYLSNRSFLISSRGNAFPAPXTSQPESRKAPPSPRLLFSL 147
           + D L+     +SS  ++ P+P T+   S    P P   + +
Sbjct: 114 LEDLLALDESTVSSSTSSIPSPSTTDDLSTNPTPPPHYTYQI 155


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +1

Query: 259  TAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTL---SIPLPTRRVNNPAPAV 417
            TAATT+G+     ++ ++P+ S            TT     + LP   V  P P +
Sbjct: 1283 TAATTIGEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVI 1338


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 94  SQPESRKAPPSPRLLFSLYINDIPRSPET 180
           S P+ R  PPS  L +   +ND  RSP T
Sbjct: 68  STPDVR--PPSSSLSYGGPVNDDVRSPGT 94


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 94  SQPESRKAPPSPRLLFSLYINDIPRSPET 180
           S P+ R  PPS  L +   +ND  RSP T
Sbjct: 224 STPDVR--PPSSSLSYGGPVNDDVRSPGT 250


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 547 LGRLYPMICRRSKMSLRNKVTLYKTCIRPV 636
           LGR++   CR +  S  N ++  + C+  V
Sbjct: 304 LGRIFRAYCRENHASWVNHLSNIEDCLNYV 333


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 307 CRCATSGTTVPWW*PRSEV 251
           C C+  GTT+P   P  +V
Sbjct: 173 CFCSEDGTTIPGDLPSKDV 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,069
Number of Sequences: 336
Number of extensions: 4321
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)