Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A17
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1017 + 21747044-21748051                                         31   0.94 
10_08_0192 + 15625851-15626765                                         31   1.6  
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185...    31   1.6  
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246...    30   2.2  
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    30   2.9  
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    30   2.9  
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840...    30   2.9  
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857...    29   3.8  
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755...    29   3.8  
03_05_1040 + 29883071-29883212,29883372-29883439,29883504-29883806     29   5.0  
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609...    29   5.0  
10_08_0445 + 17989438-17990895                                         29   6.6  
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239           28   8.8  
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    28   8.8  
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924...    28   8.8  
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627...    28   8.8  
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162     28   8.8  

>04_03_1017 + 21747044-21748051
          Length = 335

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 33/116 (28%), Positives = 44/116 (37%)
 Frame = +2

Query: 194 SPMTPPSTTRVGRRRCFIDDFRPRLPPWDXXXXXXXXXXXPRKAQRCSSKGVALRTPR*A 373
           SP TPP       RR    D+ P  PP             PR+A   S     +  PR A
Sbjct: 194 SPSTPP-------RRAASPDYSPSTPPRRAASPDYSPSTPPRRA--ASPDYTPMSPPRRA 244

Query: 374 SPSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPP 541
           +       +TPP   A    + S    PR ++   +PST      P++    TVPP
Sbjct: 245 ASPDY-TQMTPPRRAASPDYTPSTPPPPRAASPDYTPSTPPSSPLPSAAESFTVPP 299


>10_08_0192 + 15625851-15626765
          Length = 304

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +2

Query: 401 TPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPSF 547
           TPPPP A S  S  P++    S+    P+      APTS   AT PP F
Sbjct: 6   TPPPPSAPS--SAPPFKSNASSS---RPNRAPPEGAPTSPAAATRPPPF 49


>03_01_0238 +
           1854070-1854344,1854621-1854712,1854852-1855045,
           1855529-1855568,1855734-1855815,1856972-1857049,
           1857144-1857269,1857544-1857665,1858018-1858057,
           1858250-1858324,1858414-1858585
          Length = 431

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 208 AIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTL-SIPLP 384
           AI   CR +    RRL  AA    +   +WRID N  K  A    R R   T + S+P P
Sbjct: 32  AIRCCCRAQQEPRRRLSKAAAAAPERTEEWRIDGN--KPAAAARGRRRASLTAMPSLPFP 89

Query: 385 TRR 393
           + R
Sbjct: 90  SPR 92


>06_03_1403 +
           29923503-29923821,29924269-29924405,29924495-29924647,
           29924690-29925280,29925523-29925597,29925901-29926169,
           29927238-29927331
          Length = 545

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/51 (39%), Positives = 23/51 (45%)
 Frame = +2

Query: 335 SSKGVALRTPR*ASPSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPS 487
           SS G+A R P   S SR GA+  PP  F    C  +   G    N   SPS
Sbjct: 57  SSSGLAARVPEHRS-SRYGAASPPPSSFTDGSCFFNGSAGGFFGNAGQSPS 106


>05_01_0004 -
           34967-35149,35340-35501,36078-36225,36309-36385,
           36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 386 LGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPP 541
           L AS  PPPP    R S SP + P ++     P T    + PT+   A  PP
Sbjct: 73  LAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPP 124


>02_05_1224 + 35045268-35045270,35045735-35045863,35046037-35046180,
            35046306-35046451,35046583-35046739,35046838-35046896,
            35046978-35047137,35047716-35047865,35047969-35048105,
            35048186-35048332,35048428-35048540,35048880-35048971,
            35049637-35049738,35050108-35050145,35050255-35050381,
            35050462-35050632,35050721-35050852,35050929-35051038,
            35051118-35051178,35051386-35051427,35051756-35051933,
            35052043-35052248,35052843-35052962,35053138-35053182,
            35053310-35053408,35053846-35054058,35054254-35054393,
            35054469-35054583,35054684-35054722,35054816-35054899,
            35054969-35055139,35055891-35056100,35056193-35056378,
            35056473-35056601,35056679-35056749,35056834-35056933,
            35057016-35057072,35057778-35057834,35057940-35058020,
            35058256-35058338,35058448-35058562
          Length = 1572

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 31   YLSNRSFLISSRGNAFPAPXTSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFADDTA 210
            +LSN S L+     +  A       SRK PP P  LF      +  +   ++ + A D  
Sbjct: 1239 WLSNTSSLLFLLQRSLKAAGAPGSVSRKKPPQPTSLFGRMAQGLRSASFVNMHVEATDVV 1298

Query: 211  IYYSCRKKALLHRRLQTA 264
                 +  ALL ++  TA
Sbjct: 1299 RQVEAKYPALLFKQQLTA 1316


>01_01_1067 +
           8403584-8404195,8404532-8404693,8404837-8405346,
           8405434-8405493,8405721-8406137,8406576-8407100
          Length = 761

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 350 ALRTPR*ASPSRLGASITPPPPFAQSRCSTSPYRG 454
           ALR  R  SP+   A   PPPP AQ      P RG
Sbjct: 3   ALRFVRGISPAASAAPQPPPPPVAQRHHQQQPSRG 37


>05_04_0356 -
           20584212-20584628,20584798-20584899,20585658-20585705,
           20586046-20586186,20586315-20586437,20587166-20587252,
           20587630-20587742,20587844-20587943,20588217-20588601,
           20588841-20588917,20589501-20589593,20589697-20589774,
           20590923-20591246
          Length = 695

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 386 LGASITPPPPFAQSRCSTSPYRGP 457
           LGA++ PPPP A ++ + +P  GP
Sbjct: 82  LGAALPPPPPAAAAQPAVAPLPGP 105


>03_02_0650 +
           10174905-10175000,10175321-10175376,10175467-10175540,
           10176215-10176753,10176845-10177186,10177520-10177879,
           10177982-10178193,10178881-10179169,10179469-10180152
          Length = 883

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 371 ASPSRLGASITPPPPFAQSRCSTSPYRGPRRS 466
           A+P+   A+ TPPPP A S   + P   P+R+
Sbjct: 721 AAPAAQEATNTPPPPAAPSANGSPPQEPPKRA 752


>03_05_1040 + 29883071-29883212,29883372-29883439,29883504-29883806
          Length = 170

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 322 STAVLFKRGRPPNTTLSIPLPTRR 393
           S    FKRG PP   + +PLP R+
Sbjct: 118 SNGYAFKRGNPPEGIVEVPLPPRQ 141


>03_02_0168 +
           6094658-6096220,6096335-6096608,6096671-6096821,
           6097052-6097262,6097344-6097550,6097982-6098350
          Length = 924

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 447 YGLVEHRDWANGGGGVIDAPSREGDAQRGVRRATPFEEHRCAFRG 313
           YG VEHR+  N  G      + +G  +RG  +  PF   R  F G
Sbjct: 531 YGDVEHRELHNAYGYYFHMATADGLLKRGEGKDRPFVLSRAFFAG 575


>10_08_0445 + 17989438-17990895
          Length = 485

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 314 PRKAQRCSSKGVALRTPR*ASPSRLGASITPPPPFAQSRCSTSPYRGPRRS 466
           PR+ +R ++  VA R  R    S    ++TPPP     R   +P R P R+
Sbjct: 387 PRRRERAAAAAVARREIR---KSATATNMTPPPSPPHVRAPPAPARRPWRT 434


>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
          Length = 569

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
 Frame = +2

Query: 320 KAQRCSSKGVALRTPR*ASPSRLGASITPP---------PPFAQSRCSTSPYRGPRRSNI 472
           + +R  + G A RTPR    S  G   +P          PP   +  S +P  G  R+ +
Sbjct: 11  RGRRRGAAGSAARTPRGWCCSFAGVPQSPDLRPFPPSLAPPATAASSSPAPGGGAGRNKL 70

Query: 473 *A-SPSTVG*HSAPTSRRYA 529
              SPS    HS+PTS R A
Sbjct: 71  PPKSPSISSFHSSPTSSRLA 90


>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 432 HRDWANGGGGVIDAPSREGDAQRGVRRAT 346
           H     GGGGV+D     G A+ G RRAT
Sbjct: 47  HHVPGGGGGGVVDFEVLVGAAEAGNRRAT 75


>04_04_0276 +
           24091360-24091464,24091580-24091713,24091813-24092454,
           24092858-24093044
          Length = 355

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 465 QIFRRHPRQ*DDIPPPHQDGTRPCRL 542
           Q+FR H    D   P H DG RPCR+
Sbjct: 266 QLFRLHASVCDRAAP-HDDGDRPCRV 290


>02_05_1314 -
           35661824-35661912,35662031-35662454,35662689-35662787,
           35662886-35662995,35663263-35663516,35664080-35664098,
           35664834-35665075,35665662-35666401
          Length = 658

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +2

Query: 194 SPMTPPSTTRVGRRRCFIDDFRP-RLPPWDXXXXXXXXXXXPRKAQRCSSKGVALRTP 364
           +P+ PPS        CF+    P R   W            PR+    S+  + L TP
Sbjct: 8   TPLPPPSLAAASTSSCFLPSLLPIRRRRWPTPKATATAAFPPRRPAPLSANNLPLHTP 65


>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
          Length = 213

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 300 APLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEERQMG 178
           AP P P+S  G+ G    M+ RL   R   GG  GEER  G
Sbjct: 57  APAPTPVS--GAGGGDDDMRPRLPTERWRRGGGRGEERHTG 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,845,372
Number of Sequences: 37544
Number of extensions: 636377
Number of successful extensions: 2546
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2544
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)