Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A16
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 96 2e-20
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 74 1e-13
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 62 5e-10
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 58 6e-09
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 45 6e-05
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 45 6e-05
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 45 8e-05
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 42 4e-04
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 38 0.012
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 96.3 bits (229), Expect = 2e-20
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 2/144 (1%)
Frame = +1
Query: 121 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 300
++ D +KAFD++ H+ L+ KL ++ L++ + +FLSNRSFR R+ T S + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 301 VPQGSALSPLLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLG 474
VPQG+ LSPLLF +Y+NDI +A FADDT +Y S K LQ A+ +
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVV 135
Query: 475 QWFRKWRIDINPTKSAAVLFKRGR 546
W + ++ +N +K+ V + R
Sbjct: 136 DWTKGSKLTLNQSKTVHVTVGKRR 159
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 74.1 bits (174), Expect = 1e-13
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 2/219 (0%)
Frame = +1
Query: 55 VHRLTEHILIGLNRRKQIPTGTLF-FDIAKAFDKVWHNGLIYKLYN-MGVPDRLVLIIRD 228
V ++T I+ GLN + + D+ AFDKV L L G+ ++ L + +
Sbjct: 449 VIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGN 508
Query: 229 FLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAI 408
+L R R + S+ L GVPQGS +SP LF+ Y+ D+P +T L +ADD +I
Sbjct: 509 YLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSI 568
Query: 409 YYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRR 588
+K+ ++Q+ + + ++ ++ + I+ KS +F S P +
Sbjct: 569 IARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVF---------SCDPKEHK- 618
Query: 589 ANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHI 705
I PIP ++ K LG+TL+ + H+
Sbjct: 619 ----TKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDHV 653
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 62.1 bits (144), Expect = 5e-10
Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 29/221 (13%)
Frame = +1
Query: 139 KAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEG-TRSRPRQLTAGVPQGS 315
KAFD+V H+ L+ KL++ G+ DFLS+R+F +V +++GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 316 ALSPLLFSLYINDIPRS--PETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRK 489
P LF ++IN + S P + FADD +Y + +Q + + W
Sbjct: 62 VSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYSHSPPL------IQTTIDLITTWSEN 115
Query: 490 WRIDINPTKSAAVLFKRGRPPN-------ITSSIPLRSRRANTSAVS------------- 609
++ + K AA+L K G N + +S+ R A+ + VS
Sbjct: 116 NKLPLAVHK-AALLNKLGFSSNCVLLLAPLINSLVCRLLAASRTGVSTVAHSKTCLLHLG 174
Query: 610 ---PITLF---GQPIPWVSKVKYLGVTLDRGMTFRPHIKTV 714
P T++ PI + + LG+ D +TF+PHIK +
Sbjct: 175 KKNPKTVYKINNLPISPSNIARDLGILTDSKLTFKPHIKKI 215
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 58.4 bits (135), Expect = 6e-09
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 3/182 (1%)
Frame = +1
Query: 178 KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQ-LTAGVPQGSALSPLLFSLYIND 354
KL G+ ++FL NR+F ++ S+ +++GVPQGS PLLF L+IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 355 --IPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAV 528
I +P +++ FADD I+++ +++ + I V+ W + + + PTKSA
Sbjct: 899 LLIDLAPTINISCFADDVKIFHT--DPTIIQNSIDIIVS----WSKLNELPLAPTKSAL- 951
Query: 529 LFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIK 708
+ L +R N S ++ G PI S V+ LG+ D + F HI
Sbjct: 952 -------------LALGTRNKNQS----YSVDGVPITPSSTVRDLGLITDCKLKFEHHIV 994
Query: 709 TV 714
V
Sbjct: 995 KV 996
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 45.2 bits (102), Expect = 6e-05
Identities = 30/106 (28%), Positives = 47/106 (44%)
Frame = +1
Query: 46 VQQVHRLTEHILIGLNRRKQIPTGTLFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 225
+ +H L + +G R QIP +F D KAFD V H + L G + +++
Sbjct: 666 IDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLK 723
Query: 226 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPR 363
+ N + + R +T GV QG +SP LFS + + R
Sbjct: 724 ECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 768
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 45.2 bits (102), Expect = 6e-05
Identities = 30/106 (28%), Positives = 47/106 (44%)
Frame = +1
Query: 46 VQQVHRLTEHILIGLNRRKQIPTGTLFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 225
+ +H L + +G R QIP +F D KAFD V H + L G + +++
Sbjct: 405 IDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLK 462
Query: 226 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPR 363
+ N + + R +T GV QG +SP LFS + + R
Sbjct: 463 ECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 507
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/106 (28%), Positives = 47/106 (44%)
Frame = +1
Query: 46 VQQVHRLTEHILIGLNRRKQIPTGTLFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 225
+ +H L + +G R QIP +F D KAFD V H + L G + +++
Sbjct: 495 IDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLK 552
Query: 226 DFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPR 363
+ N + + R +T GV QG +SP LFS + + R
Sbjct: 553 ECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 597
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +1
Query: 121 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRV-EGTRSRPRQLTA 297
+ F ++ AFDKV H LI KL + V L R +S ++F +V + S
Sbjct: 890 IHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQI 949
Query: 298 GVPQGSALSPLLFSLYIN----DIPRSPETHLALFADDTAIY 411
G P+GS +F ++IN +IP + ++D IY
Sbjct: 950 GAPRGSESRQFMFLVFINSLLCEIPINISCSACAISEDLEIY 991
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +1
Query: 121 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 300
+F D KAFD V H + L G + + ++++ N + + R +T G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 301 VPQGSALSPLLFSLYINDIPR 363
V QG +SP LFS + + R
Sbjct: 99 VRQGDPISPNLFSACLEHVFR 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,707,600
Number of Sequences: 27780
Number of extensions: 426485
Number of successful extensions: 1092
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -