Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A16
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31990.1 68414.m03934 expressed protein                             31   1.3  
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam...    28   6.9  
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam...    28   6.9  

>At1g31990.1 68414.m03934 expressed protein
          Length = 325

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 648 EGQISRRHPRQRDDIPSPYKNGTRXRRVYSRTTLSNAL 761
           +  + + HP + D +P  Y+N  +  R+ + TTLS+ +
Sbjct: 48  QSHVGKAHPLKMDQMPRRYRNRRKTLRLATNTTLSSII 85


>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
           protein similar to dTDP-glucose 4,6-dehydratase from
           Aneurinibacillus thermoaerophilus GI:16357461,
           Saccharopolyspora spinosa GI:15077647, RmlB from
           Leptospira borgpetersenii GI:4234803; contains Pfam
           profile PF01370 NAD dependent epimerase/dehydratase
           family
          Length = 664

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 130 DIAKAFDKVWHNGLIYKLYNMGVP-DRLVLIIRDFLS 237
           D+A+AF+ V H G +  +YN+G   +R V+ + + +S
Sbjct: 230 DVAEAFEVVLHKGEVNHVYNIGTTRERRVIDVANDIS 266


>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
           protein low similarity to dTDP-D-glucose-4,6-dehydratase
           from Aneurinibacillus thermoaerophilus GI:16357461,
           Sphingomonas sp. GI:1314581; contains Pfam profile
           PF01370: NAD dependent epimerase/dehydratase family;
           putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
          Length = 667

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 130 DIAKAFDKVWHNGLIYKLYNMGV--PDRLVLIIRD 228
           D+A+AF+ V H G I  +YN+G     R++ + RD
Sbjct: 232 DVAEAFEVVLHKGEIGHVYNVGTKRERRVIDVARD 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,995
Number of Sequences: 28952
Number of extensions: 403517
Number of successful extensions: 1075
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)