Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A15
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   287   1e-78
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   287   1e-78
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   0.72 
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.0  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   7.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  287 bits (705), Expect = 1e-78
 Identities = 128/203 (63%), Positives = 162/203 (79%)
 Frame = +1

Query: 37  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 216
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 217 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 396
           PGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW
Sbjct: 63  PGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW 122

Query: 397 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 576
           +             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 577 IQLNGGTIEDKVKWAREHLEKPI 645
           IQ+NGG++ DKV+WAREH EK +
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTV 203



 Score = 66.5 bits (155), Expect = 5e-12
 Identities = 29/52 (55%), Positives = 34/52 (65%)
 Frame = +2

Query: 650 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKKHKGLRKVACIGAWH 805
           + S F Q+EMID I            +RW TK+LPRK H+GLRKVACIGAWH
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWH 256


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  287 bits (704), Expect = 1e-78
 Identities = 127/203 (62%), Positives = 162/203 (79%)
 Frame = +1

Query: 37  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 216
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 217 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 396
           PGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW
Sbjct: 63  PGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW 122

Query: 397 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 576
           +             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 577 IQLNGGTIEDKVKWAREHLEKPI 645
           IQ+NGG++ DKV+WAREH EK +
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTV 203



 Score = 66.5 bits (155), Expect = 5e-12
 Identities = 29/52 (55%), Positives = 34/52 (65%)
 Frame = +2

Query: 650 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKKHKGLRKVACIGAWH 805
           + S F Q+EMID I            +RW TK+LPRK H+GLRKVACIGAWH
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWH 256


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect(2) = 0.72
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 305 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 457
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269



 Score = 21.0 bits (42), Expect(2) = 0.72
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 572 WKSNLTVVPSRTK*NGPENIWRNLSLVDSVFAQDEMI 682
           W+ N+    S        + + + SLVD  FA DE I
Sbjct: 277 WEKNIIYDESDVNKTNQSSFFIDKSLVDIDFAFDENI 313


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 499 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 609
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 207 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 43
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,645,062
Number of Sequences: 5004
Number of extensions: 75751
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)