Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A15
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   276   1e-74
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   273   1e-73
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   1.2  
05_04_0324 - 20273797-20274261                                         29   4.8  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  276 bits (677), Expect = 1e-74
 Identities = 124/205 (60%), Positives = 158/205 (77%), Gaps = 1/205 (0%)
 Frame = +1

Query: 37  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 216
           HRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++
Sbjct: 3   HRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEK 62

Query: 217 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 396
           PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 63  PGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNW 122

Query: 397 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIM 573
                         +  + G+K I+   +KM +Y S+VRVIAHTQ++ +K  +QKKAH+M
Sbjct: 123 CKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLM 182

Query: 574 EIQLNGGTIEDKVKWAREHLEKPIP 648
           EIQ+NGGTI DKV +  +  EK IP
Sbjct: 183 EIQINGGTIADKVDYGYKFFEKEIP 207



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 29/52 (55%), Positives = 34/52 (65%)
 Frame = +2

Query: 650 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKKHKGLRKVACIGAWH 805
           VD+VF +DEMID I            +RW   +LPRK H+GLRKVACIGAWH
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWH 259


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  273 bits (670), Expect = 1e-73
 Identities = 123/205 (60%), Positives = 157/205 (76%), Gaps = 1/205 (0%)
 Frame = +1

Query: 37  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 216
           HRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++
Sbjct: 3   HRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEK 62

Query: 217 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 396
           PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 63  PGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNW 122

Query: 397 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIM 573
                         +  + G+K I+   +KM +Y SVVRVI HTQ++ +K  +QKKAH+M
Sbjct: 123 CKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLM 182

Query: 574 EIQLNGGTIEDKVKWAREHLEKPIP 648
           EIQ+NGGTI DKV +  +  EK IP
Sbjct: 183 EIQINGGTIADKVDYGYKFFEKEIP 207



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 29/52 (55%), Positives = 34/52 (65%)
 Frame = +2

Query: 650 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKKHKGLRKVACIGAWH 805
           VD+VF +DEMID I            +RW   +LPRK H+GLRKVACIGAWH
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWH 259


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 465 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 581
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 124 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 297
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 298 VGYIETPHGLRAL 336
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,586,262
Number of Sequences: 37544
Number of extensions: 533849
Number of successful extensions: 1199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)