BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_FL5_A15 (861 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 1.6 AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 24 1.6 DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 23 3.6 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 24.2 bits (50), Expect = 1.6 Identities = 8/17 (47%), Positives = 14/17 (82%) Frame = -3 Query: 676 FILGKHRIDQG*VSPDV 626 F++G+HRI +G +PD+ Sbjct: 404 FVVGQHRILKGPANPDI 420 >AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. Length = 238 Score = 24.2 bits (50), Expect = 1.6 Identities = 8/17 (47%), Positives = 14/17 (82%) Frame = -3 Query: 676 FILGKHRIDQG*VSPDV 626 F++G+HRI +G +PD+ Sbjct: 110 FVVGQHRILKGPANPDI 126 >DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR protein. Length = 381 Score = 23.0 bits (47), Expect = 3.6 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -2 Query: 263 MVTASTISFLLIFEPGRSGSLTTWVI 186 MV TI +++IF G G++TT + Sbjct: 39 MVIPLTIIYMIIFVTGIFGNITTCTV 64 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 242,511 Number of Sequences: 438 Number of extensions: 5087 Number of successful extensions: 10 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of database: 146,343 effective HSP length: 57 effective length of database: 121,377 effective search space used: 27795333 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -